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3 results for “strain calculation”
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group. in Distribution of extracellular enzyme-producing bacteria in the digestive tracts of 4 brackish water fish species
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group.
Input parameters, output data, and script to calculate strain and velocity from fault source parameters
<p>This archive contains two data tables, one script, and one dataset to accompany the paper:</p> <p><strong>Strain and velocity across the Great Basin derived from 15-ka fault slip rates: Implications for continuous deformation and seismic hazard in the Walker Lane</strong></p> <p><em>Nadine G. Reitman<sup>1 </sup> and Peter Molnar<sup>1,2</sup></em></p> <p><sup>1</sup>Department of Geological Sciences, University of Colorado Boulder</p> <p><sup>2</sup>Cooperative Institute for Research in Environmental Science (CIRES), University of Colorado Boulder</p> <p> </p> <p>The data tables contain the input source fault parameters (fault strike, dip, rake, length, location, and slip rate) and the contribution to strain calculated for each fault relative to 317 degrees using the associated script. The script uses the methods of Kostrov (1974) and Haines (1982) to calculate strain and velocity across the Great Basin using slip rates reported in the USGS National Seismic Hazard Map (2020 update of the 2014 data, Petersen et al, 2014) and Pérouse & Wernicke (2017). The script is written in Python3 and requires the user to have some knowledge of how to run Python code. The included dataset (hazfaults_clean.p) contains the data to run the script for the USGS fault sources. </p> <p>Please contact nadine.reitman@colorado.edu with questions.</p>
Deep sequencing and fitness calculation for plasmids carrying the CREATE cassette from the enriched tolerant strains under different pressures by using Illumina protocol
GEO Series GSE200448. Escherichia coli str. K-12 substr. MG1655. 5 samples. Type: Other.
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