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394 results for “thesis”
Lithic raw data for Sheppard's (1987) thesis on the Capsian
<div> <div> <div> <p>This is a collection of six lithic raw data spreadsheets created in the course of Peter Sheppard’s doctoral project on the prehistoric tradition of Northwest Africa known as the Capsian. Sheppard’s project investigated technological and stylistic variation in Capsian lithics. The spreadsheets provided here contain about 507,000 observations collected on some 20,100 artefacts (blanks, cores, burins, backed bladelets, and geometric microliths) from 16 sites. We recovered these data uncorrupted, byte-for-byte from a 40-year-old tape. In the provided PDF document, we restate with additional clarifications the data definitions from Sheppard (1987). We also detail the steps we took to transform the files found on the tape into usable data spreadsheets.</p> </div> </div> </div>
Physarum polycephalum Repeated Maze Honors Thesis, Tulane University, SE Louisiana 2024-2025
We conducted an experimental maze study from January to March, 2025, on Physarum polycephalum at Tulane University in New Orleans, Louisiana. We collected data on changes in locomotive behavior as P. polycephalum repeatedly solved the same maze. From daily photographs of growth, we recorded path choice, contamination presence and location, number of times P. polycephalum grew directly over maze walls, how many of the four dead-ends P. polycephlaum grew down, and efficiency through surface area covered. Data collection is complete. We found a significant increase in efficiency, and a significant decrease in both dead-end paths and wall jumping, as maze repetitions increased. This points to evidence of information storage and retrieval, and therefore cognitive processes such as memory, within the single-cellular protist Physarum polycephalum.
Data from Bieri Thesis: Evaluating Coastal Protection Benefits of Restored Oyster Reef Designs - 2022
This dataset consists of spreadsheets used in the creation of: "Elizabeth Bieri, Evaluating Coastal Protection Benefits of Restored Oyster Reef Designs. MS Thesis, University of Virginia, Charlottesville, VA. Advisors: Matthew Reidenbach & Patricia Wiberg, 2022" (https://doi.org/10.18130/2b04-wz72). Documentation on methods and types of data are given in the thesis and are not repeated here. There are two .zip files. One contains the original Excel workbooks. The other contains the data from individual sheets within the workbooks as comma-separated-value (.csv) text files. The file listing for the CSV files are: Archive: Bieri_Comma_separated_Value_Files.zip Length Date Time Name --------- ---------- ----- ---- 0 2025-12-15 12:47 Bieri_Comma_separated_Value_Files/ 1787 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/elevation_crests.csv 239 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/elevation_S4.csv 273 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/elevation_S7.csv 652 2025-12-15 12:45 Bieri_Comma_separated_Value_Files/erosionpins_exposed.csv 476 2025-12-15 12:45 Bieri_Comma_separated_Value_Files/erosionpins_exposed_no_reef.csv 102 2025-12-15 12:46 Bieri_Comma_separated_Value_Files/erosionpins_S4.csv 97 2025-12-15 12:46 Bieri_Comma_separated_Value_Files/erosionpins_S7.csv 297 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/grainsize_july.csv 290 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/grainsize_oct.csv 399 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/infauna_om_All.csv 509 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/infauna_om_July2021.csv 507 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/infauna_om_Oct2021.csv 1242 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/infauna_om_Sed_OM.csv 516 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/infauna_om_Sept2020.csv 913981 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/jul2021waveS4.csv 715881 2025-12-15 12:41 Bieri_Comma_separated_Value_Files/jul2021waveS7.csv 5251
Accompanying data for the PhD thesis 'Nanomaterial safety for microbially-colonized hosts'
<p><strong>These files include all data presented in chapter 6 of the dissertation:</strong></p> <p><strong>"Nanomaterial safety for microbially-colonized hosts: microbiota-mediated physisorption interactions and particle-specific toxicity" by Bregje Brinkmann (2022).</strong></p> <p>The data presented in chapters 2-5 have previously been published elsewhere:</p> <ul> <li>Chapter 2: <em>Zenodo</em> (DOI: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.5281%2Fzenodo.6800734&data=05%7C01%7Cb.w.brinkmann%40cml.leidenuniv.nl%7Cb5837fcc5a1b4cb5e88008da7615fe87%7Cca2a7f76dbd74ec091086b3d524fb7c8%7C0%7C0%7C637952134073527979%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=z4LB7Ziyiy%2BLXe0SllX67AJ%2F9zhfARBXp8QNzZsVg%2B4%3D&reserved=0">10.5281/zenodo.6800734</a>).</li> <li>Chapter 3: <em>Mendeley</em> <em>Data</em> (DOI: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.17632%2F2d4hcr5cb5.1&data=05%7C01%7Cb.w.brinkmann%40cml.leidenuniv.nl%7Cb5837fcc5a1b4cb5e88008da7615fe87%7Cca2a7f76dbd74ec091086b3d524fb7c8%7C0%7C0%7C637952134073527979%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=x7LFz2OgiJ20%2BD18QlwR9qIwGH%2BCbju4BKqkUaqIoXs%3D&reserved=0">10.17632/2d4hcr5cb5.1</a>)</li> <li>Chapter 4: <em>Figshare</em> (DOI: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.6084%2Fm9.figshare.c.4923261&data=05%7C01%7Cb.w.brinkmann%40cml.leidenuniv.nl%7Cb5837fcc5a1b4cb5e88008da7615fe87%7Cca2a7f76dbd74ec091086b3d524fb7c8%7C0%7C0%7C637952134073527979%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=n3wegOuHzKihCO%2FKbZhClnYHPyxWI0cALApBgLkUHnQ%3D&reserved=0">10.6084/m9.figshare.c.4923261</a>)</li> <li>Chapter 5: <em>Mendeley Data </em>(DOI: <a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.17632%2F4nfg69v8hy.1&data=05%7C01%7Cb.w.brinkmann%40cml.leidenuniv.nl%7Cb5837fcc5a1b4cb5e88008da7615fe87%7Cca2a7f76dbd74ec091086b3d524fb7c8%7C0%7C0%7C637952134073527979%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=0A0ktYDmgfxwc7U%2BgzHzQUj8Q5wixi%2BUzoSzMctlbso%3D&reserved=0">10.17632/4nfg69v8hy.1</a>)</li> </ul> <p><br> <strong>1. Data presented in Figure 6.1:</strong> Survival_CFU_(...)<br> Tab-delimited file with zebrafish larvae survival, and the number of colony-forming units (CFUs) associated with zebrafish larvae, following exposure to silver nanoparticles (nAg) from 3-5 days-post fertilization (dpf):</p> <ul> <li><em>Concentration</em>: Nominal exposure concentration (mg nAg·L<sup>-1</sup>).</li> <li><em>Date</em>: The date at which the mortality was scored (Format: DD/MM/YYYY). </li> <li><em>Family</em>: A code referring to the aquarium of wildtype zebrafish (ABxTL) that were crossed to obtain the larvae for the experiment. </li> <li><em>Survival</em>: Percentage of larvae that had survived the treatment.</li> <li><em>CFU</em>: Number of colony-forming units that was isolated per larva</li> </ul> <p>The methodology for toxicity tests and the procedures to determine CFU counts, have been published in <em>Nanotoxicology</em>:</p> <p>Brinkmann BW, Koch BEV, Spaink HP, Peijnenburg WJGM, Vijver MG. 2020. Colonizing microbiota protect zebrafish larvae against silver nanoparticle toxicity. Nanotoxicology. 14: 725-739. DOI: <a href="http://doi.org/10.1080/17435390.2020.1755469">10.1080/17435390.2020.1755469</a></p> <p> </p> <p><strong>2. Data presented in Figure 6.2:</strong> ABs_DoseResponses_(...)<br> Tab-delimited file with zebrafish larvae mortality following a pretreatment of 0, 6 or 72 hours with an antibiotic and antifungal cocktail, and subsequent exposure to nAg from 3-5 dpf:</p> <ul> <li><em>Concentration</em>: Nominal exposure concentration (mg nAg·L<sup>-1</sup>). </li> <li><em>Mortality</em>: Percentage of larvae that had died.</li> <li><em>Date</em>: The date at which the mortality was scored (Format: DD/MM/YYYY).</li> <li><em>Family</em>: A code referring to the aquarium of wildtype zebrafish (ABxTL) that were crossed to obtain the larvae for the experiment. </li> <li><em>ABs</em>: Duration of the antibiotic/ antifungal pretreatment, either 0, 6 or 72 hours.</li> </ul> <p> </p> <p><strong>3. Data presented in Figure 6.3:</strong> il1beta_eGFP_(...)<br> Three folders comprising fluorescence microscopy images (TIFF format) of il1beta:eGFP reporter zebrafish larvae at 5 dpf:</p> <ul> <li><em>(...)_replicates1_20200226</em>: images for the first experimental replicate.</li> <li><em>(...)_replicates2_20200304</em>: images for the second experimental replicate.</li> <li><em>(...)_replicates3_20200318</em>: images for the third experimental replicate.</li> </ul> <p>For each of the replicates, the following images were acquired:</p> <ul> <li><em>nZnO_GFP</em>: GFP signal for larvae exposed to nZnO.</li> <li><em>Znion_GFP</em>: GFP signal for larvae exposed to zinc ions.</li> <li><em>nZnO_trans</em>: transmitted light images for larvae exposed to nZnO. </li> <li><em>Znion_trans</em>: transmitted light images for larvae exposed to zinc ions.</li> </ul> <p>Additionally, the following images have previously been deposited to <em>Mendeley Data </em>(DOI: <a href="http://doi.org/10.1016/j.ecoenv.2022.113522">10.17632/4nfg69v8hy.1</a>):</p> <ul> <li><em>nAg_GFP</em>: GFP signal for larvae exposed to nAg.</li> <li><em>nAg_trans</em>: transmitted light images for larvae exposed to nAg.</li> <li><em>Agion_GFP</em>: GFP signal for larvae exposed to silver ions.</li> <li><em>Agion_trans</em>: transmitted light images for larvae exposed to silver ions.</li> <li><em>control_GFP</em>: GFP signal for control larvae that had not been exposed to silver ions or nAg</li> <li><em>control_trans</em>: transmitted light images for control larvae that had not been exposed to silver ions or nAg.</li> </ul> <p>All image processing steps have been published in <em>Ecotoxicology and Environmental Safety</em>:</p> <p>Brinkmann BW, Koch BEV, Peijnenburg WJGM, Vijver MG. 2022. Microbiota-dependent TLR2 signaling reduces silver nanoparticle toxicity to zebrafish larvae. Ecotox Environ Saf. 237: 113522. DOI: <a href="http://doi.org/10.1016/j.ecoenv.2022.113522">10.1016/j.ecoenv.2022.113522</a></p> <p> </p> <p><strong>Abbreviations:</strong></p> <ul> <li><em>ABs</em>: antibiotics</li> <li><em>CFU</em>: colony-forming units</li> <li><em>dpf</em>: days post-fertilization</li> <li><em>il1beta</em>: interleukin-1beta</li> <li><em>nAg</em>: silver nanoparticles (NM-300 K)</li> <li><em>nZnO</em>: zinc oxide nanoparticles (NM-110)</li> </ul>
Datasets from Analysis of the strategic management of science, research and innovation thesis
<p>Datasets were obtained from Czech R&D information system and used in my diploma thesis. The thesis (in Czech language) explores system of governance in R&D in the Czech republic and his impacts on the field of molecular biology in the period of 1995-2014.</p>
Detecting small changes in tropical forests from space... data and code for thesis chapter 4
<p>SAR and UAV-LiDAR data used in chapter 4 of my thesis <em>Detecting small changes in tropical forests from space: experiments using synthetic aperture radar. </em>This content has also been submitted for peer review in Frontiers in Remote Sensing.</p> <p>DEM_timeseries_3m contains phase height and coherence from TanDEM-X InSAR high-resolution spolight images, processed by Jose-Luis Bueso-Bello at DLR. NetCDF format, dimensions latitude, longitude, time.</p> <p>TDX_descending_intensity contains intensity from the same TanDEM-X time series, covering an area of the Madre de Dios region in Peru. These data were processed by Harry Carstairs using ESA's SNAP software.</p> <p>UAV_change_1m_mask is a raster showing the change in canopy height at the study site between June 2019 and July 2021, according to two UAV LiDAR campaigns, with 1m pixels, and with areas with low point density masked out.</p> <p>CODE.zip contains python scripts and notebooks used to collate the data, create change detection metrics, develop SAR models of canopy height, and produce the figures.</p> <p>Funded by European Research Council (ERC) grant to the Tropical Forest Degradation Experiment (FODEX).</p>
Data cleaning and analysis for the Master's thesis: DIFFERENCES IN CONSUMER PREFERENCES FOR UNWEATHERED AND WEATHERED WOOD
<p>The data and analytical support the Master's thesis submitted by Hana Remesova at the University of Primorska<br> Faculty of Mathematics, Natural Sciences, and Information Technologies. The .csv files are data files, the .Rmd file is an R markdown which can be run. The product of knitting the .Rmd file is the .html.</p>
Repository of data supporting the thesis "Poly-algorithmic Techniques in Real Quantifier Elimination"
<p>Dataset of various files (as a .zip) supporting the PhD thesis "Poly-algorithmic Techniques in Real Quantifier Elimination" by Zak Tonks, University of Bath. The PhD thesis is in the area of Quantifier Elimination over the Reals (QE) in Computer Algebra. The PhD thesis concerns implementation of algorithms in Quantifier Elimination, which largely culminates in the package QuantifierElimination for the Computer Algebra software Maple. Much of this repository is output of the benchmarking of this package against various other packes in Maple and otherwise. Otherwise there are some auxiliary tools and files to assist with working with QE in Maple, converting between various formats, and understanding case studies and the package QuantifierElimination via software demoes as Maple worksheets.</p> <p>An overview of the contents of this repository (as a .zip file, which contains subdirectories described in the README):</p> <ul> <li>The example databases contributed from the project, as files that can be read into Maple defining tables of examples, and associated functions to build or examine various examples,</li> <li>A pdf file providing the references for all examples from the example databases, and typesetting of the examples as associated QE problems,</li> <li>The benchmarking data produced from the benchmarking of the project as csv (comma separated value) files, and the Excel workbooks (xlsx files) processing said data into survival plots for the thesis,</li> <li>Copies of the survival plots themselves as .png files,</li> <li>The bash and Maple scripts used to generate the raw benchmarking data, that can be reused, including documentation how to do so in the associated README,</li> <li>Other auxiliary tools allowing for conversion of QE formulae between formats (such as that of SyNRAC, RegularChains, QuantifierElimination (amongst packages in Maple), and QEPCAD B.</li> <li>Maple worksheets and the associated exported pdf files used in software demos at conferences to demonstrate features of QuantifierElimination.</li> <li>Some pdf files demonstrating early case studies on Lazard curtains generated from an early development build of QuantifierElimination.</li> </ul> <p>Lastly, there is a README with more detail on the files of the repository further. To emulate the benchmarking of the thesis, an understanding of bash and potentially Maple is assumed, but the raw data from the project is provided here. Before QuantifierElimination's official release, the source code and/or Maple package as an .mla file is available for interested parties upon request to the author Zak Tonks (<a href="mailto:zak.p.tonks@bath.edu">zak.p.tonks@bath.edu</a>). Any other queries about this data or associated work should be directed to this email address. The author's PhD supervisor's email address is <a href="mailto:J.H.Davenport@bath.ac.uk">J.H.Davenport@bath.ac.uk</a>.</p>
PPHPC OpenCL-Thesis Datasets
<p>These are the datasets used for the CPU and GPU OpenCL results in the PhD thesis "Agent-Based Modeling on High Performance Computing Architectures" by Nuno Fachada (2016).</p>
Thesis: Supplementary Tables and reports
<p>Contains Supplementary information for my Thesis</p> <p>Files:</p> <p>model_perfs_and_motifs_top5_annot.mht: MHTML table containing top5 motifs, B1H alignments and dataset quality annotations along with other information. Download and open in Google Chrome browser</p> <p>all_reports.tar.gz : All TF Modisco reports bundled together which are linked in the Table as a standalone resource. Contains every motif, submotif , motif hit distribution with respect to the peak summits and alignments to B1H recognition-code</p> <p>model_archive.tar.gz : All models</p> <p>models_info.tsv: Maps model name to ENCODE ids and dataset related information.</p> <p>Datasets used other than ENCODE use these keys: </p> <p>HughesNB:</p> <p>Najafabadi, Hamed S., et al. "C2H2 zinc finger proteins greatly expand the human regulatory lexicon." <em>Nature biotechnology</em> 33.5 (2015): 555-562.</p> <p> </p> <p>HughesGR:</p> <p>Schmitges, Frank W., et al. "Multiparameter functional diversity of human C2H2 zinc finger proteins." <em>Genome research</em> 26.12 (2016): 1742-1752.</p> <p>ChipExo:</p> <p>Imbeault, Michaël, Pierre-Yves Helleboid, and Didier Trono. "KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks." <em>Nature</em> 543.7646 (2017): 550-554.</p> <p> </p> <p> </p> <p> </p>
Early Neolithic polished stone tools analysis: Diploma thesis supplementary data
<p>Supplementary data of a master thesis: Early Neolithic polished stone tools analysis defended at Masaryk Univerzity, Brno, Czech Republic.</p> <p>The repository contains supplementary database and datasets concerning morphometric shape analysis of polished stone tools and related R scripts. The structure is described in attached read me file.</p>
Data on scientific production on letramento informacional in Brazil: collection procedures and resulting corpus [Dataset of thesis]
<p>Dataset containing two dataset:</p> <p>1 - Description of the data collection procedures carried out for the thesis: Appropriation of the term letramento by Brazilian Library and Information Science: terminological-conceptual tensions surrounding letramento informacional by Alves (2023).</p> <p>2 - Four Spreadsheet in CSV UTF-8 containing in each of them a set of bibliographic references in partially raw data.</p>
Online Appendix for PhD Thesis Titled "Dissecting Causal Relationships and Molecular Mechanisms in Disease using Genetic Risk Profiles"
<p>This repository contains 23 tables and two figures, which are too big to be included in the Appendix section of my thesis document.</p> <p>The second version includes additional summary statistics of metabolite-PGS associations which can be found at http://mrcieu.mrsoftware.org/metabolites_PRS_atlas/.</p>
Data accompanying the master thesis: A neuronal model for visually evoked startle responses in schooling fish
<p>This dataset contains data that was generated and analyzed for the master thesis "A neuronal model for visually evoked startle responses". All related material, including analysis code, of the master thesis can be found at https://github.com/awakenting/master-thesis.</p>
answered questionnaire to Bachelor Thesis "Wie sinnvoll ist die Ergänzung des Resource Discovery Systems an der Bibliothek des Max-Planck-Instituts für evolutionäre Anthropologie durch einen zusätzlichen, externen Index?"
<p>The dataset contains the answers that were given in the online questionnaire that was conducted as part of the Bachelor Thesis "Wie sinnvoll ist die Ergänzung des Resource Discovery Systems an der Bibliothek des Max-Planck-Instituts für evolutionäre Anthropologie durch einen zusätzlichen, externen Index?"</p> <p>The questionnaire and further information can be found in the Bachelor Thesis, which is linked uner Related Works.</p>
Supplementary Material to the PhD Thesis of Luz, Zoneibe (University of Lausanne): Characterizing conodont bioapatite from the Early-Triassic: an analytical and palaeoclimatological approach
<p>The present dataset contains the Supplements cited in the PhD Thesis of Zoneibe Augusto Silva Luz (University of Lausanne), entitled '<em>Characterizing conodont bioapatite from the Early-Triassic: an analytical and palaeoclimatological approach</em>', defended the 29th of June in Lausanne. Three table of contents (TOC) are provided for each of the three thesis chapters. The main thesis is deposited at the Bibliothèque cantonale et universitaire de Lausanne, Section des thèses imprimées et des échanges,and digitally at the SERveur Académique Lausannois (Serval) ().</p> <p>Le présent set de données contient les Suppléments cités dans la thèse de doctorat de Zoneibe Augusto Silva Luz (Université de Lausanne), intitulée 'Characterizing conodont bioapatite from the Early-Triassic : an analytical and palaeoclimatological approach', soutenue le 29 juin à Lausanne. Trois tables des matières (TOC) sont fournies pour chacun des trois chapitres de la thèse. La thèse principale est déposée dans la Bibliothèque cantonale et universitaire de Lausanne, Section des thèses imprimées et des échanges, et électroniquement dans le SERveur Académique Lausannois (Serval) ().</p>
M. Kelly PhD thesis; Chapter 4 - Supplemental Table S1
<p>Supplemental Table for my PhD thesis (Chapter 4). Supplemental Table S1 contains all data relevant to the predator choice tests.</p>
Wordlist files of lexical data from Papua New Guinea and western Solomons Oceanic languages collated for Ross's 1986 PhD thesis and 1988 publication thereof
<p>It occurs to me that the files containing Western Oceanic lexical data that I collected in the late 70s/early 80s for my PhD (Ross 1988) might be useful to someone. They are also used in the volumes of <em>The lexicon of Proto Oceanic </em>(Ross, Pawley & Osmond 1998, 2003, 2011, 2016, 2023). In any case, it is right that they be made publicly available, something that wasn't so easy back then. Most of the material is from wordlists that I collected during fieldwork in Papua New Guinea from around 1978 to 1982. The file cor06 is omitted because it contains SE Solomonic data (outside Western Oceanic) drawn from Tryon & Hackman 1983.</p> <p>I keyed the data into text files in a format such that each line was the entry for a single word, and each field within an entry was marked by a backslash code (I adapted this format from SIL's conventions at the time), then arranged them in cognate sets, each set separated from the next by an empty line. This work was done between 1983 and 1985, when text files were the best way to store data. They were entered on a terminal connected to a mainframe computer at the ANU. I have converted the ASCII symbols used in the original files into UTF-8 here in the interests of readability. The conversion was largely automatic, and I have not done a full check of each file, so there may be glitches.</p> <p>Each file contains languages from a region, as listed below (and the regions sometimes cut across subgroups determined by the comparative method). Three-letter abbreviations are used for language names, and two key files are also provided, one (COR-abbrevs) ordered by regions (determined by the numerals that start each line), the other by alphabetical order of language name (COR-abbrevs-alph). Some three-letter codes are followed by a hyphen and an extra letter. These are dialects. For example, MUM stands for Mumeng and MUM-P for the Patep dialect of Mumeng.</p> <p>Data files are labelled with COR (for 'correspondence sets') plus a numeral. The numerals are: 1-3 New Ireland; 4 Willaumez Peninsula (New Britain) area; 5 NW Solomonic; 7+8 Papuan Tip; 9 Vitiaz Strait area and NG north coast; 10 Huon Gulf and Markham Valley; 11 South and west New Britain. 7+8 are partial only. When I keyed the files, I had to rely on a mainframe's nightly back-up onto tape spools. One night the system failed, and so did the restore, and I lost some data.</p> <p>The backslash codes in the data files are: \l language; \p protolanguage; \w word; \g gloss; \n note; \s source. The formatting of these files is a little odd, since they served as input to routines I wrote to pull out sound correspondences. Anything after '%' is the elicited form: what immediately precedes '%' has had something 'undone', e.g. metathesis.</p> <p>The orthography of the files is phonemic and largely obvious. The conventions are set out in the introductions to the volumes of <em>The lexicon of Proto Oceanic.</em></p> <p>Finally, the files also contain reconstructions at various interstages at the top of a cognate set. These were inserted for heuristic reasons during my research. Many of them did not survive into my PhD thesis, and they should preferably be ignored. The reader who is interested in current Oceanic reconstructions should turn to the volumes of <em>The lexicon of Proto Oceanic.</em></p>
Dataset from University of Idaho 2004, master's thesis [Littoral ecology of epilithic algae in the Rocky Reach Pool, Mid-Columbia River (Washington State) - The effects of reservoir fluctuations.]
(Abstract from thesis) Epilithic algae, water column physical/chemical properties, and sediments were examined in the impounded Mid-Columbia River including the Rocky Reach Reservoir. Primary objectives included determination of the effects reservoir drawdown has on epilithic algae and potential nutrient enrichment via sediment. Epilithic algae were analyzed by pigment concentration, gravimetrically, and species composition. Reservoir elevation fluctuated at higher rates at tailrace sites (0.41-0.25 m/hr) compared to the forebay site (0.06-0.08 m/hr). Littoral exposure times were also greater at tailrace sites (mean of 8 hrs compared to 0 hr at the forebay site). Mean epilithic algae monochromatic chlorophyll a over all sampling periods at mainstem sites was 76.7 ± 4.8 mg/m2 (95 % C.I.). Epilithic algae monochromatic chlorophyll a in the zone of water fluctuation (0-1 m) was less at Wells tailrace (38.8 mg/m2) compared to Rocky Reach forebay (141.3 mg/m2) during summer, 2000 and 2001. Mean epilithic biofilm ash-free oven-dry weight over all sampling periods at mainstem sites was 25.6 ± 1.5 g/m2 (95 % C.I.). Mean autotrophic index across all mainstem locations was 439 indicating a large heterotrophic component within the epilithic biofilms. Epilithic algae communities were dominated by diatoms (50.2 %) and cyanobacteria (35.9 %), with some green algae (13.8 %). Canonical correlation analysis indicated that temperature, depth, site, and the water elevation change rate were important controllers of epilithic algae chlorophyll pigments. Mean textural characteristics of dredged sediment were 51.1 % sand, 43.2 % silt, and 5.7 % clay. Mean organic matter content in this sediment was 4.1 %. The mean seston sedimentation rate across mainstem locations was 11.3 g m-2 d-1 and organic matter comprised 14.7 % of the material collected from the water column.
Fire history dendrochronology study, super old growth data, central western Cascades, Oregon, 2002 (Giglia thesis)
The primary objectives of this study were to assay where super old-growth (SOG) persists on the landscape, what factors enabled it to survive for more than 550 years, and to develop a predictive model for the occurrence of SOG. To meet these objectives, data were synthesized from prior fire history work done in the central western Cascades of Oregon (Morrison and Swanson unpublished; Teensma 1987; Morrison and Swanson 1990; Weisberg 1998). The study involved the following steps: (1) the collection of primary data and maps from each study, (2) the creation of a master database, and (3) analysis of the synthesized data.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.