Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

45

datasets available to search

ShareScore release 0.9.0

Reset

Dataset results

45 results for “trophic guilds”

Learn how ShareScore rates datasets ↗
zenodo40/100

Spreadsheet Template for Trophic Guild Data for Fungi

<p>Spreadsheet template for <a href="https://doi.org/10.5281/zenodo.14646717">Trophic guild data for fungi</a></p>

opencc-zeroAug 2024View details →
zenodo40/100

Trophic guild data for fungi

<p>Data on trophic guilds of fungi derived from the following sources:</p> <p>Alker AP, Smith GW, Kim K. 2001. Characterization of Aspergillus sydowii (Thom et Church), a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105&ndash;11.</p> <p>Bauer, R., Begerow, D., Sampaio, J.P., Wei&beta;, M., Oberwinkler, F., 2006. The simple-septate basidiomycetes: a synopsis. Mycol Progress 5, 41&ndash;66.</p> <p>Blackwell, W.H., Letcher, P.M. and Powell, M.J., 2019. Review of Nucleophaga (a primitive,__cryptomycotan__genus): Summary of named and unnamed species, with discussion of contemporary and historical observations. Phytologia, 101, pp.1-18.</p> <p>Cali A., Becnel J.J., Takvorian P.M. (2016) Microsporidia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.</p> <p>Canter, H. M., G. H. M. Jaworski. 1982. Some Observation on the Alga Fragilaria crotonensis Kitton and its Parasitism by Two Chytridiaceous Fungi. Annals of Botany 49(4):429&ndash;446.</p> <p>Cavalier-Smith, T., Chao, E.E., Lewis, R., 2018. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma 255, 1517&ndash;1574.</p> <p>Chen, X., Lili, L., Zhang, Y., Zhang, J., Ouyang, S., Zhang, Q., Tong, Y., Xu, J. and Zuo, S., 2017. Functional analysis of polygalacturonase gene RsPG2 from Rhizoctonia solani, the pathogen of rice sheath blight. European Journal of Plant Pathology, 149(2), pp.491-502.</p> <p>Dewel, R. A., J. D. Joines, and J. J. Bond. 1985. A new chytridiomycete parasitizing the tardigrade Milnesium tardigradum. Canad. J. Bot. 63:1525- 1534.</p> <p>Dwyer, J., Burwell, B., Humber, R.A., Mcleod, C., Fleetwood, M., Johnson, T. 2006. Schizangiella serpentis infection in a Virginia ratsnake (Elaphe obsoleta). Veterinary Pathology. 43(5):819-819.&nbsp;</p> <p>Embree, R.W. and Indoh, H., 1967. Aquamortierella, a new genus in the Mucorales. Bulletin of the Torrey Botanical Club, pp. 464-467.&nbsp;</p> <p>Gryganskyi, A.P., Humber, R.A., Smith, M.E., Miadlikovska, J., Wu, S., Voigt, K., Walther, G., Anishchenko, I.M. and Vilgalys, R., 2012. Molecular phylogeny of the Entomophthoromycota. Molecular Phylogenetics and Evolution, 65(2), pp.682-694.</p> <p>Guo, Y., Jud, W., Weikl, F. et al. 2021. Volatile organic compound patterns predict fungal trophic mode and lifestyle. Commun Biol 4:673.</p> <p>He, M.-Q., Zhao, R.-L., Hyde, K.D., Begerow, D., Kemler, M., Yurkov, A., McKenzie, E.H.C., Rasp&eacute;, O., Kakishima, M., S&aacute;nchez-Ram&iacute;rez, S., Vellinga, E.C., Halling, R., Papp, V., Zmitrovich, I.V., Buyck, B., Ertz, D., Wijayawardene, N.N., Cui, B.-K., Schoutteten, N., Liu, X.-Z., Li, T.-H., Yao, Y.-J., Zhu, X.-Y., Liu, A.-Q., Li, G.-J., Zhang, M.-Z., Ling, Z.-L., Cao, B., Anton&iacute;n, V., Boekhout, T., da Silva, B.D.B., De Crop, E., Decock, C., Dima, B., Dutta, A.K., Fell, J.W., Geml, J., Ghobad-Nejhad, M., Giachini, A.J., Gibertoni, T.B., Gorj&oacute;n, S.P., Haelewaters, D., He, S.-H., Hodkinson, B.P., Horak, E., Hoshino, T., Justo, A., Lim, Y.W., Menolli, N., Me&scaron;ić, A., Moncalvo, J.-M., Mueller, G.M., Nagy, L.G., Nilsson, R.H., Noordeloos, M., Nuytinck, J., Orihara, T., Ratchadawan, C., Rajchenberg, M., Silva-Filho, A.G.S., Sulzbacher, M.A., Tkalčec, Z., Valenzuela, R., Verbeken, A., Vizzini, A., Wartchow, F., Wei, T.-Z., Wei&szlig;, M., Zhao, C.-L., Kirk, P.M., 2019. Notes, outline and divergence times of Basidiomycota. Fungal Diversity 99, 105&ndash;367.</p> <p>Karpov, S.A., Mamkaeva, M.A., Aleoshin, V.V., Nassonova, E., Lilje, O. and Gleason, F.H., 2014. Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia. Frontiers in Microbiology, 5, p.112.</p> <p>Kramer, C. L. (1958). A new genus in the Protomycetaceae. Mycologia, 50(6), 916-926.</p> <p>Kubanek J, Jensen PR, Keifer PA, Sullards MC, Collins DO, Fenical W. 2003. Seaweed resistance to microbial attack: a targeted chemical defence against marine fungi. Proc. Natl. Acad. Sci. USA 100: 6916&ndash;21.&nbsp;</p> <p>K&uuml;pper FC, Maier I, M&uuml;ller DG, Loiseaux-de Goer S, Guillou L. 2006. Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii (Wright) Magnus and Chytridium polysiphoniae Cohn. Cryptogam. Algol. 27:165&ndash;84.</p> <p>Martel, A., Spitzen-van der Sluijs, A., Blooi, M., Bert, W., Ducatelle, R., Fisher, M.C., Woeltjes, A., Bosman, W., Chiers, K., Bossuyt, F. and Pasmans, F., 2013. Batrachochytrium salamandrivorans sp. nov. causes lethal chytridiomycosis in amphibians. Proceedings of the National Academy of Sciences, 110(38), pp.15325-15329.</p> <p>M&ouml;ckel, L., Meusemann, K., Misof, B., Schwartze, V.U., De Fine Licht, H.H., Voigt, K., Stielow, B., de Hoog, S., Beutel, R.G., Buellesbach, J., 2022. Phylogenetic Revision and Patterns of Host Specificity in the Fungal Subphylum Entomophthoromycotina. Microorganisms 10, 256.</p> <p>Naranjo-Ortiz, M.A., Gabald&oacute;n, T., 2019. Fungal evolution: diversity, taxonomy and phylogeny of the Fungi. Biol Rev Camb Philos Soc 94, 2101&ndash;2137.</p> <p>Olive, L. S. 1980. Caulochytrium protostelioides sp. nov., a New Chytrid with Aerial Sporangia. American Journal of Botany 67(4):568-574.</p> <p>Patterson, D., 1999. The Diversity of Eukaryotes. The American Naturalist 154(supplement):S96-S124.</p> <p>Powell, M.J. 1984. Fine structure of the unwalled thallus of Rozella polyphagi in its host Polyphagus euglenae. Mycologia 76:1039-1048.</p> <p>Powell M.J. 1993. Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment. Mycologia 85:1-20.</p> <p>Powell M.J. 2016. Blastocladiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.</p> <p>Powell M.J. 2016. Chytridiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.</p> <p>Riccioni C, Belfiori B, Rubini A, Bucci G, Ianigro M (2024). Dataset of endophytic and forest fungi (IBBR-CNR-FABI-01). Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/arjsuy accessed via GBIF.org on 2025-01-14.</p> <p>Sch&uuml;&szlig;ler, A., 2012. The Geosiphon&ndash;Nostoc endosymbiosis and its role as a model for arbuscular mycorrhiza research. In Fungal associations (pp. 77-91). Springer, Berlin, Heidelberg.</p> <p>Sekimoto, S., Rochon, D., Long, J.E. et al. 2011. A multigene phylogeny of Olpidium and its implications for early fungal evolution. BMC Evol Biol 11:331.</p> <p>Strassert, J.F.H., Wurzbacher, C., Herv&eacute;, V. et al. Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the Chytridiomycota and a potential to switch between hosts. Sci Rep 11, 396 (2021).</p> <p>Toome, M., Roberson, R.W., Aime, M.C., 2013. Meredithblackwellia eburnea gen. et sp. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov.&mdash;toward resolving higher-level classification in Microbotryomycetes. Mycologia 105, 486&ndash;495.</p> <p>Vilela, L.A.F. and Dam&aacute;sio, M.M., 2021. Molecular and cellular changes of arbuscular mycorrhizal fungi-plant interaction in pesticide contamination. Chapter 41 in Handbook of Bioremediation (pp. 649-656). Academic Press.</p> <p>Walker, G., Dorrell, R., Schlacht, A., Dacks, J., 2011. Eukaryotic systematics: A user__s guide for cell biologists and parasitologists. Parasitology 138, 1638&ndash;63.</p> <p>Wijayawardene, N.N., Hyde, K.D., Rajeshkumar, K.C., Hawksworth, D.L., Madrid, H., Kirk, P.M., Braun, U., Singh, R.V., Crous, P.W., Kukwa, M., L&uuml;cking, R., Kurtzman, C.P., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, H.T., Timdal, E., Ertz, D., Etayo, J., Phillips, A.J.L., Groenewald, J.Z., Papizadeh, M., Selbmann, L., Dayarathne, M.C., Weerakoon, G., Jones, E.B.G., Suetrong, S., Tian, Q., Casta&ntilde;eda-Ruiz, R.F., Bahkali, A.H., Pang, K.-L., Tanaka, K., Dai, D.Q., Sakayaroj, J., Hujslov&aacute;, M., Lombard, L., Shenoy, B.D., Suija, A., Maharachchikumbura, S.S.N., Thambugala, K.M., Wanasinghe, D.N., Sharma, B.O., Gaikwad, S., Pandit, G., Zucconi, L., Onofri, S., Egidi, E., Raja, H.A., Kodsueb, R., C&aacute;ceres, M.E.S., P&eacute;rez-Ortega, S., Fiuza, P.O., Monteiro, J.S., Vasilyeva, L.N., Shivas, R.G., Prieto, M., Wedin, M., Olariaga, I., Lateef, A.A., Agrawal, Y., Fazeli, S.A.S., Amoozegar, M.A., Zhao, G.Z., Pfliegler, W.P., Sharma, G., Oset, M., Abdel-Wahab, M.A., Takamatsu, S., Bensch, K., de Silva, N.I., De Kesel, A., Karunarathna, A., Boonmee, S., Pfister, D.H., Lu, Y.-Z., Luo, Z.-L., Boonyuen, N., Daranagama, D.A., Senanayake, I.C., Jayasiri, S.C., Samarakoon, M.C., Zeng, X.-Y., Doilom, M., Quijada, L., Rampadarath, S., Heredia, G., Dissanayake, A.J., Jayawardana, R.S., Perera, R.H., Tang, L.Z., Phukhamsakda, C., Hern&aacute;ndez-Restrepo, M., Ma, X., Tibpromma, S., Gusmao, L.F.P., Weerahewa, D., Karunarathna, S.C., 2017. Notes for genera: Ascomycota. Fungal Diversity 86, 1&ndash;594.</p> <p>World Health Organization, 2022. WHO fungal priority pathogens list to guide research, development and public health action. Geneva: World Health Organization.</p>

opencc-zeroAug 2024View details →
zenodo40/100

Fig. 7 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 7. Spearman correlations between the distribution (percentage frequency) of guilds and scores of the first axis of the principal components analysis (PCA1) applied to the correlation matrix of abiotic variables. White circle = headwaters; gray circle = middle stretch; and black circle = mouth of the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 5 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 5. Longitudinal niche breadth (B values) of each fish trophic guild in the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil. Aq = aquatic; ter = terrestrial.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 4 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 4. Mean ± standard error of diet breadth (B) of fish trophic guilds in the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil. Aq = aquatic; ter = terrestrial. Piscivores and omnivores are not included in the ANOVA.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 6 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 6. Density (a) and biomass (b) of trophic guilds along the longitudinal gradient of the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil. Aq = aquatic; ter = terrestrial.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 3 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 3. Ordination of fish species in the respective trophic guilds (a, b, c) and food items (d, e, f) along the longitudinal gradient of the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil. Circles represent species belonging to the same trophic guild. Codes according to Table 3.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 2 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 2. Ordination of sampling sections along the environmental gradient defined by the first two axes of the principal components analysis (PCA1 and PCA2) applied to the correlation matrix of abiotic variables of the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 1 in Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

Fig. 1. Location of the Vermelho River, East Atlantic basin, Antonina, Paraná State, Brazil. Black circles indicate the sampling sections; arrow indicates the direction of flow.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Figure 2 in Diet composition, guild structure and trophic relationships of wintering birds of prey in an estuarine wetland (The Evros Delta National Park, Greece)

Figure 2. Cluster analysis (dendrogram) based on the biomass proportions of the diets of the seven species of birds of prey studied in Evros Delta.

opencc-by-4.0Jan 2021View details →
zenodo40/100

Figure 1 in Diet composition, guild structure and trophic relationships of wintering birds of prey in an estuarine wetland (The Evros Delta National Park, Greece)

Figure 1. Diet compiled for the most important prey taxa of the seven species of birds of prey studied in the Evros Delta, a) by biomass (upper graph) and b) by numbers (lower graph) (Shannon index/Evenness are shown below each species name).

opencc-by-4.0Jan 2021View details →
zenodo40/100

Fig. 3 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 3. Phylogenetic generalized least squares (PGLS) regression of host body mass (values were log-transformed) with richness of helminths associated to wildlife hosts (values were corrected for sampling effort).

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 2 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 2. Relationships between latitude and the average taxonomic distinctness of overall helminths (A) and nematodes (B).

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 4 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 4. Parasite richness and average taxonomic distinctness by host trophic guild (the size of circle represents the number of hosts belonging to each trophic guild).

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 1 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 1. Maps showing the geographic locations of the records, classified by phylum of the subsetted database.

opencc-by-4.0Dec 2020View details →
zenodo40/100

Trophic guild data for microbial eukaryotes

<p>Data on trophic guilds of microbial eukaryotes derived from the following sources:</p> <p>Adl, S.M., Bass, D., Lane, C.E., Luke&scaron;, J., Schoch, C.L., Smirnov, A., Agatha, S., Berney, C., Brown, M.W., Burki, F., C&aacute;rdenas, P., Čepička, I., Chistyakova, L., Campo, J. del, Dunthorn, M., Edvardsen, B., Eglit, Y., Guillou, L., Hampl, V., Heiss, A.A., Hoppenrath, M., James, T.Y., Karnkowska, A., Karpov, S., Kim, E., Kolisko, M., Kudryavtsev, A., Lahr, D.J.G., Lara, E., Gall, L.L., Lynn, D.H., Mann, D.G., Massana, R., Mitchell, E.A.D., Morrow, C., Park, J.S., Pawlowski, J.W., Powell, M.J., Richter, D.J., Rueckert, S., Shadwick, L., Shimano, S., Spiegel, F.W., Torruella, G., Youssef, N., Zlatogursky, V., Zhang, Q., 2019. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology 66, 4&ndash;119. <a href="https://doi.org/10.1111/jeu.12691">https://doi.org/10.1111/jeu.12691</a></p> <p>Aleoshin, V.V., Mylnikov, A.P., Mirzaeva, G.S., Mikhailov, K.V. and Karpov, S.A., 2016. Heterokont Predator Develorapax marinus gen. et sp. nov.&ndash;A Model of the Ochrophyte Ancestor. Frontiers in microbiology, 7, p.1194. <a href="https://doi.org/10.3389/fmicb.2016.01194">https://doi.org/10.3389/fmicb.2016.01194</a></p> <p>Ann PJ, Huang JH, Wang IT, Ko WH, 2006. Pythiogeton zizaniae, a new species causing basal stalk rot of water bamboo in Taiwan. Mycologia 98: 116e120. <a title="https://doi.org/10.1080/15572536.2006.11832717" href="https://doi.org/10.1080/15572536.2006.11832717">https://doi.org/10.1080/15572536.2006.11832717</a></p> <p>Azevedo C., Hine P.M. (2016) Haplosporidia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_16-1">https://doi.org/10.1007/978-3-319-32669-6_16-1</a></p> <p>Baldauf S.L., Strassmann J.E. (2017) Dictyostelia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_14-1">https://doi.org/10.1007/978-3-319-32669-6_14-1</a>&nbsp;</p> <p>Beakes G.W., Thines M. (2016) Hyphochytriomycota and Oomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_26-1">https://doi.org/10.1007/978-3-319-32669-6_26-1 </a></p> <p>Bell, E.M. and&nbsp;Laybourn‐Parry, J., 2003. Mixotrophy in the antarctic phytoflagellate Pyramimonas gelidicola (Chlorophyta: Prasinophyceae). Journal of Phycology, 39(4), pp.644-649. <a href="https://doi.org/10.1046/j.1529-8817.2003.02152.x">https://doi.org/10.1046/j.1529-8817.2003.02152.x</a></p> <p>Bennett R.M., Honda D., Beakes G.W., Thines M. (2017) Labyrinthulomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_25-1">https://doi.org/10.1007/978-3-319-32669-6_25-1</a></p> <p>Bernard, Catherine, Alastair G. B. Simpson &amp; David J. Patterson (2000) Some free-living flagellates (protista) from anoxic habitats Ophelia 52(2):113-142. <a href="https://doi.org/10.1080/00785236.1999.10409422">https://doi.org/10.1080/00785236.1999.10409422</a></p> <p>Bigelow, D. M., Olsen, M. W., &amp; Gilbertson, R. L. (2005). Labyrinthula terrestris sp. nov., a new pathogen of turf grass. Mycologia 97:185&ndash;190. <a href="https://doi.org/10.1080/15572536.2006.11832852">https://doi.org/10.1080/15572536.2006.11832852</a></p> <p>Boltovskoy D., Anderson O.R., Correa N.M. (2017) Radiolaria and Phaeodaria. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_19-2">https://doi.org/10.1007/978-3-319-32669-6_19-2</a></p> <p>Bourland, W. A. &amp; Struder-Kypke, M. C. 2010. Agolohymena aspidocauda nov. gen., nov. spec., a histophagous freshwater tetrahymenid ciliate in the family Deltopylidae (Ciliophora, Hymenostomatia), from Idaho (northwest USA): morphology, ontogenesis and molecular phylogeny. Eur. J. Protistol. 46:221&ndash;242. <a href="https://doi.org/10.1016/j.ejop.2010.04.003">https://doi.org/10.1016/j.ejop.2010.04.003</a></p> <p>Bower, S. M., McLean, N., &amp; Whitaker, D. J. (1989). Mechanism of infection by Labyrinthuloides haliotidis (Protozoa, Labyrinthomorpha), a parasite of abalone (Haliotis kamtschatka) (Mollusca, Gastropoda). Journal of Invertebrate Pathology, 53, 401&ndash;409.</p> <p>Buaya, A. T., Ploch, S., Inaba, S., &amp; Thines, M. (2019). Holocarpic oomycete parasitoids of red algae are not Olpidiopsis. Fungal systematics and evolution 4:21&ndash;31. <a href="https://doi.org/10.3114/fuse.2019.04.03">https://doi.org/10.3114/fuse.2019.04.03</a></p> <p>Bulman S., Neuhauser S. (2016) Phytomyxea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_24-1">https://doi.org/10.1007/978-3-319-32669-6_24-1</a></p> <p>Burki, F., Roger, A.J., Brown, M.W., Simpson, A.G.B., 2020. The New Tree of Eukaryotes. Trends in Ecology &amp; Evolution 35, 43&ndash;55. <a href="https://doi.org/10.1016/j.tree.2019.08.008">https://doi.org/10.1016/j.tree.2019.08.008</a></p> <p>Carr, M., Leadbeater, B. S., Hassan, R., Nelson, M., &amp; Baldauf, S. L. (2008). Molecular phylogeny of choanoflagellates, the sister group to Metazoa. Proceedings of the National Academy of Sciences of the United States of America, 105(43):16641&ndash;16646. <a href="https://doi.org/10.1073/pnas.0801667105">https://doi.org/10.1073/pnas.0801667105</a></p> <p>Cavalier-Smith, T., &amp; Chao, E. E. (2004). Protalveolate phylogeny and systematics and the origins of Sporozoa and dinoflagellates (phylum Myzozoa nom. nov.). European Journal of Protistology 40(3):185-212. <a href="https://doi.org/10.1016/j.ejop.2004.01.002">https://doi.org/10.1016/j.ejop.2004.01.002</a></p> <p>Cavalier-Smith, T., 2018. Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences. Protoplasma 255, 297&ndash;357. <a href="https://doi.org/10.1007/s00709-017-1147-3">https://doi.org/10.1007/s00709-017-1147-3</a></p> <p>Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388&ndash;420. <a href="https://doi.org/10.1007/s00239-004-0353-8">https://doi.org/10.1007/s00239-004-0353-8</a></p> <p>Cavalier-Smith, T., Chao, E.E., Lewis, R., 2018. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma 255, 1517&ndash;1574. <a href="https://doi.org/10.1007/s00709-018-1241-1">https://doi.org/10.1007/s00709-018-1241-1</a></p> <p>Čepička I., Dolan M.F., Gile G.H. (2016) Parabasalia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_9-1">https://doi.org/10.1007/978-3-319-32669-6_9-1</a></p> <p>Cho, Anna, Denis V. Tikhonenkov, Elisabeth Hehenberger, Anna Karnkowska, Alexander P. Mylnikov, and Patrick J. Keeling. 2022. Monophyly of Diverse Bigyromonadea and their Impact on Phylogenomic Relationships Within Stramenopiles. Molecular Phylogenetics and Evolution 171: 107468. <a href="https://doi.org/10.1016/j.ympev.2022.107468">https://doi.org/10.1016/j.ympev.2022.107468</a></p> <p>Cook, M.E., Graham, L.E., 2016. Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;20. <a href="https://doi.org/10.1007/978-3-319-32669-6_36-1">https://doi.org/10.1007/978-3-319-32669-6_36-1</a></p> <p>Cook, W.I., 1932. On the life-history and systematic position of the organisms causing dry top rot of sugar cane. The Journal of Agriculture of the University of Puerto Rico, 16(4):409-418.</p> <p>Dorrell, R.G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K., Miyashita, H., Gile, G.H., Kamikawa, R., 2019. Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proceedings of the National Academy of Sciences 116, 6914&ndash;6923. <a href="https://doi.org/10.1073/pnas.1819976116">https://doi.org/10.1073/pnas.1819976116</a></p> <p>Dykstra M, Olive L. 1975. An unusual sorocarp-producing Protist. Mycologia 67 (4):873&ndash;879. <a href="https://doi.org/10.1080/00275514.1975.12019815">https://doi.org/10.1080/00275514.1975.12019815</a></p> <p>Eikrem W. et al. (2017) Haptophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_38-2">https://doi.org/10.1007/978-3-319-32669-6_38-2</a></p> <p>Eli&aacute;&scaron;, M., Amaral, R., Fawley, K.P., Fawley, M.W., Němcov&aacute;, Y., Neustupa, J., Přibyl, P., Santos, L.M.A., &Scaron;evč&iacute;kov&aacute;, T., 2017. Eustigmatophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;39. <a href="https://doi.org/10.1007/978-3-319-32669-6_39-1">https://doi.org/10.1007/978-3-319-32669-6_39-1</a></p> <p>Farmer, M. A. (1993). Ultrastructure of Ditrichomonas honigbergii n. g., n. sp. (Parabasalia) and its relationships to amitochondrial protists. The Journal of Eukaryotic Microbiology 40:619&ndash;626. <a href="https://doi.org/10.1111/j.1550-7408.1993.tb06119.x">https://doi.org/10.1111/j.1550-7408.1993.tb06119.x</a></p> <p>Figueroa‐Martinez, F., Nedelcu, A.M., Smith, D.R., Reyes‐Prieto, A., 2015. When the lights go out: the evolutionary fate of free‐living colorless green algae. New Phytol 206, 972&ndash;982. <a href="https://doi.org/10.1111/nph.13279">https://doi.org/10.1111/nph.13279</a></p> <p>Frankovich, T.A., Ashworth, M.P., Sullivan, M.J., Theriot, E.C., Stacy, N.I., 2018. Epizoic and Apochlorotic Tursiocola species (Bacillariophyta) from the Skin of Florida Manatees (Trichechus manatus latirostris). Protist 169, 539&ndash;568. <a href="https://doi.org/10.1016/j.protis.2018.04.002">https://doi.org/10.1016/j.protis.2018.04.002</a></p> <p>Galindo, L.J., L&oacute;pez-Garc&iacute;a, P., Torruella, G., Karpov, S. and Moreira, D., 2021. Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. Nature communications, 12(1), pp.1-14. <a href="https://doi.org/10.1038/s41467-021-25308-w">https://doi.org/10.1038/s41467-021-25308-w</a></p> <p>Gast, R.J., 2017. Centrohelida and Other Heliozoan-Like Protists, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;17. <a href="https://doi.org/10.1007/978-3-319-32669-6_28-1">https://doi.org/10.1007/978-3-319-32669-6_28-1</a></p> <p>Gibson W. (2016) Kinetoplastea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_7-1">https://doi.org/10.1007/978-3-319-32669-6_7-1</a></p> <p>Glockling, S.L., Marshall, W.L., Gleason, F.H., 2013. Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea). Fungal Ecology 6, 237&ndash;247. <a href="https://doi.org/10.1016/j.funeco.2013.03.005">https://doi.org/10.1016/j.funeco.2013.03.005</a></p> <p>Gomaa F, Mitchell EAD, Lara E. 2013. Amphitremida (Poche, 1913) Is a New Major, Ubiquitous Labyrinthulomycete Clade. PLoS ONE 8(1): e53046. <a href="https://doi.org/10.1371/journal.pone.0053046">https://doi.org/10.1371/journal.pone.0053046</a></p> <p>G&oacute;mez, F. and Skovgaard, A., 2015. The molecular phylogeny of the type-species of Oodinium Chatton, 1912 (Dinoflagellata: Oodiniaceae), a highly divergent parasitic dinoflagellate with non-dinokaryotic characters. Systematic parasitology, 90(2), pp.125-135. <a href="https://doi.org/10.1007/s11230-014-9538-8">https://doi.org/10.1007/s11230-014-9538-8</a></p> <p>G&oacute;mez, F., Artigas, L.F. and Gast, R.J., 2019. Molecular phylogeny of the parasitic dinoflagellate Syltodinium listii (Gymnodiniales, Dinophyceae) and generic transfer of Syltodinium undulans comb. nov.(= Gyrodinium undulans). European Journal of Protistology, 71, p.125636. <a href="https://doi.org/10.1016/j.ejop.2019.125636">https://doi.org/10.1016/j.ejop.2019.125636</a></p> <p>Grant J, Tekle YI, Anderson OR, Patterson DJ, Katz LA. Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles. Protist. 2009 Aug;160(3):376-85. <a href="https://doi.org/10.1016/j.protis.2009.01.001">https://doi.org/10.1016/j.protis.2009.01.001</a></p> <p>Graupner, N., Jensen, M., Bock, C., Marks, S., Rahmann, S., Beisser, D., Boenigk, J., 2018. Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics. FEMS Microbiology Ecology 94, fiy039. <a href="https://doi.org/10.1093/femsec/fiy039">https://doi.org/10.1093/femsec/fiy039</a></p> <p>Hall J.D., McCourt R. (2017) Zygnematophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_41-2">https://doi.org/10.1007/978-3-319-32669-6_41-2</a></p> <p>Hampl V. (2016) Preaxostyla. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_8-1">https://doi.org/10.1007/978-3-319-32669-6_8-1</a></p> <p>Hehenberger, E., Tikhonenkov, D.V., Kolisko, M., Del Campo, J., Esaulov, A.S., Mylnikov, A.P. and Keeling, P.J., 2017. Novel predators reshape holozoan phylogeny and reveal the presence of a two-component signaling system in the ancestor of animals. Current Biology, 27(13), pp.2043-2050. <a href="https://doi.org/10.1016/j.cub.2017.06.006">https://doi.org/10.1016/j.cub.2017.06.006</a></p> <p>Heiss, A.A., Brown, M.W., Simpson, A.G.B., 2016. Apusomonadida, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;27. <a href="https://doi.org/10.1007/978-3-319-32669-6_15-1">https://doi.org/10.1007/978-3-319-32669-6_15-1</a></p> <p>Hoef-Emden, K., Archibald, J.M., 2016. Cryptophyta (Cryptomonads), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;41. <a href="https://doi.org/10.1007/978-3-319-32669-6_35-1">https://doi.org/10.1007/978-3-319-32669-6_35-1</a></p> <p>Horiguchi T. (2016) Raphidophyceae (Raphidophyta). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_37-1">https://doi.org/10.1007/978-3-319-32669-6_37-1</a></p> <p>Howe, A.T., Bass, D., Scoble, J.M., Lewis, R., Vickerman, K., Arndt, H., Cavalier-Smith, T., 2011. Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia. Protist 162, 332&ndash;372. <a href="https://doi.org/10.1016/j.protis.2010.10.002">https://doi.org/10.1016/j.protis.2010.10.002</a></p> <p>Huang, J.-H., Chen, C.-Y., Lin, Y.-H., Ann, P.-J., Huang, H.-C., &amp; Chung, W.-H. (2012). Six new species of Pythiogeton in Taiwan, with an account of the molecular phylogeny of this genus. Mycoscience, 54:130&ndash;147. <a href="https://doi.org/10.1016/j.myc.2012.09.007">https://doi.org/10.1016/j.myc.2012.09.007</a></p> <p>Ichinomiya, M., dos Santos, A.L., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., de Vargas, C., No&euml;l, M.-H., Vaulot, D., Kuwata, A., 2016. Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J 10, 2419&ndash;2434. <a href="https://doi.org/10.1038/ismej.2016.38">https://doi.org/10.1038/ismej.2016.38</a></p> <p>Ja&scaron;ke, K., Barcytė, D., P&aacute;nek, T., &Scaron;evč&iacute;kov&aacute;, T., Eli&aacute;&scaron;ov&aacute;, A., Eli&aacute;&scaron;, M., 2022. The net-like heterotrophic amoeba Leukarachnion salinum sp. nov. (Ochrophyta, Stramenopiles) has a cryptic plastid. bioRxiv. <a href="https://doi.org/10.1101/2022.04.05.487141">https://doi.org/10.1101/2022.04.05.487141</a></p> <p>Jaskowska, E., Butler, C., Preston, G., Kelly, S. 2015. Phytomonas: Trypanosomatids Adapted to Plant Environments. PLOS Pathogens 11 (1): e1004484. <a href="https://doi.org/10.1371/journal.ppat.1004484">https://doi.org/10.1371/journal.ppat.1004484</a></p> <p>Jee HJ, Ho HH, Cho WD, 2000. Pythiogeton zeae sp. nov. causing root and basal stalk rot of corn in Korea. Mycologia 92: 522e527. <a href="https://doi.org/10.1080/00275514.2000.12061188">https://doi.org/10.1080/00275514.2000.12061188</a></p> <p>Johnston, M.R.L. and Davies, A.J., 1973. A Pirhemocyton-like parasite of the blenny, Blennius pholis L.(Teleostei; Blenniidae) and its relationship to Immanoplasma Neumann, 1909. International Journal for Parasitology, 3(2), pp.235-241. <a href="https://doi.org/10.1016/0020-7519(73)90028-3">https://doi.org/10.1016/0020-7519(73)90028-3</a></p> <p>Joubert, J.J. and Rijkenberg, F.H.J., 1971. Parasitic green algae. Annual Review of Phytopathology, 9(1):45-64. <a href="https://doi.org/10.1146/annurev.py.09.090171.000401">https://doi.org/10.1146/annurev.py.09.090171.000401</a></p> <p>Kai, A., Yoshii, Y., Nakayama, T. and Inouye, I., 2008. Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159(3), pp.435-457. <a href="https://doi.org/10.1016/j.protis.2007.12.003">https://doi.org/10.1016/j.protis.2007.12.003</a></p> <p>Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K., Leander, B.S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y., 2015. Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae): Evolution of colorless Nitzschia. Phycol Res 63:19&ndash;28. <a href="https://doi.org/10.1111/pre.12072">https://doi.org/10.1111/pre.12072</a></p> <p>Kawai H., Henry E.C. (2016) Phaeophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_31-1">https://doi.org/10.1007/978-3-319-32669-6_31-1</a></p> <p>Keeling, P.J., 2004. Diversity and evolutionary history of plastids and their hosts. American journal of botany, 91(10), pp.1481-1493. <a href="https://doi.org/10.3732/ajb.91.10.1481">https://doi.org/10.3732/ajb.91.10.1481</a></p> <p>Keeling, P.J., 2016. Chlorarachniophytes, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;17. <a href="https://doi.org/10.1007/978-3-319-32669-6_34-1">https://doi.org/10.1007/978-3-319-32669-6_34-1</a></p> <p>Kostka M. (2016) Opalinata. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_4-1">https://doi.org/10.1007/978-3-319-32669-6_4-1</a></p> <p>Kostygov, A.Y., Karnkowska, A., Vot&yacute;pka, J., Tashyreva, D., Maciszewski, K., Yurchenko, V., Luke, J., 2021. Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses. Open Biology 11:200407. <a href="https://doi.org/10.1098/rsob.200407">https://doi.org/10.1098/rsob.200407</a></p> <p>Kristiansen, J., &Scaron;kaloud, P., 2016. Chrysophyta, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;38. <a href="https://doi.org/10.1007/978-3-319-32669-6_43-1">https://doi.org/10.1007/978-3-319-32669-6_43-1</a></p> <p>K&uuml;hn, S., Medlin, L. and Eller, G., 2004. Phylogenetic position of the parasitoid nanoflagellate Pirsonia inferred from nuclear-encoded small subunit ribosomal DNA and a description of Pseudopirsonia n. gen. and Pseudopirsonia mucosa (Drebes) comb. nov. Protist, 155(2), pp.143-156. <a href="https://doi.org/10.1078/143446104774199556">https://doi.org/10.1078/143446104774199556</a></p> <p>Kulda J., Noh&yacute;nkov&aacute; E., Čepička I. (2016) Retortamonadida (with Notes on Carpediemonas-Like Organisms and Caviomonadidae). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_3-1">https://doi.org/10.1007/978-3-319-32669-6_3-1</a></p> <p>K&uuml;pper FC, Maier I, M&uuml;ller DG, Loiseaux-de Goer S, Guillou L. 2006. Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii (Wright) Magnus and Chytridium polysiphoniae Cohn. Cryptogam. Algol. 27:165&ndash;84</p> <p>Leander B.S., Lax G., Karnkowska A., Simpson A.G.B. (2017) Euglenida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_13-1 Lester R.J.G., Hine P.M. (2017) Paramyxida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_21-1">https://doi.org/10.1007/978-3-319-32669-6_21-1</a></p> <p>Lhee, D., Ha, J. S., Kim, S., Park, M. G., Bhattacharya, D., &amp; Yoon, H. S. (2019). Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. Scientific reports, 9(1), 2560. <a href="https://doi.org/10.1038/s41598-019-38621-8">https://doi.org/10.1038/s41598-019-38621-8</a></p> <p>Lipa, J.J., 1963. Infections Caused by Protozoa Other Than Sporozoa. Pages 335&ndash;361 in: Insect Pathology, Edward A. Steinhaus, ed. Academic Press. <a href="https://doi.org/10.1016/B978-0-12-395603-3.50014-8">https://doi.org/10.1016/B978-0-12-395603-3.50014-8</a></p> <p>Lobban, C.S., Honda, D., Chihara, M. and Schefter, M., 1995. Chrysocystis fragilis gen. nov., sp. nov.(Chrysophyceae, Sarcinochrysidales), with Notes on Other Macroscopic. Micronesica, 28(1), pp.91-102.</p> <p>Lynn, D.H., 2016. Ciliophora, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;52. <a href="https://doi.org/10.1007/978-3-319-32669-6_23-1">https://doi.org/10.1007/978-3-319-32669-6_23-1</a></p> <p>Maistro S., Broady P., Andreoli C., Negrisolo E. (2016) Xanthophyceae. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_30-1">https://doi.org/10.1007/978-3-319-32669-6_30-1</a></p> <p>Mangot, J.-F., Debroas, D., Domaizon, I., 2011. Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review. Hydrobiologia 659, 37&ndash;48. <a href="https://doi.org/10.1007/s10750-010-0268-x">https://doi.org/10.1007/s10750-010-0268-x</a></p> <p>Mann D.G., Crawford R.M., Round F.E. (2016) Bacillariophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_29-1">https://doi.org/10.1007/978-3-319-32669-6_29-1</a></p> <p>Marchant, H. J., &amp; Thomsen, H. A. (1994). Haptophytes in polar waters. In J. C. Green &amp; B. S. C. Leadbeater (Eds.), The Haptophyte algae (Vol. 51, pp. 209&ndash;228). Oxford: Clarendon.</p> <p>Maruyama, S., Kim, E., 2013. A Modern Descendant of Early Green Algal Phagotrophs. Current Biology 23, 1081&ndash;1084. <a href="https://doi.org/10.1016/j.cub.2013.04.063">https://doi.org/10.1016/j.cub.2013.04.063</a></p> <p>McCourt, R.M., Karol, K.G., Hall, J.D., Casanova, M.T., Grant, M.C., 2017. Charophyceae (Charales), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;19. <a href="https://doi.org/10.1007/978-3-319-32669-6_40-2">https://doi.org/10.1007/978-3-319-32669-6_40-2</a></p> <p>Muehlstein, L. K., &amp; Porter, D. (1991). Labyrinthula zosterae sp. nov., the causative agent of wasting disease of eelgrass, Zostera marina. Mycologia, 83, 180&ndash;191. <a href="https://doi.org/10.1080/00275514.1991.12025994">https://doi.org/10.1080/00275514.1991.12025994</a></p> <p>Nakayama, T., 2015. Biology, Diversity and Ecology of Free-Living Heterotrophic Flagellates, in: Ohtsuka, S., Suzaki, T., Horiguchi, T., Suzuki, N., Not, F. (Eds.), Marine Protists. Springer Japan, Tokyo, pp. 63&ndash;87. <a href="https://doi.org/10.1007/978-4-431-55130-0_4">https://doi.org/10.1007/978-4-431-55130-0_4</a></p> <p>Oborn&iacute;k, M., 2020. Photoparasitism as an Intermediate State in the Evolution of Apicomplexan Parasites. Trends in Parasitology 36, 727&ndash;734. <a href="https://doi.org/10.1016/j.pt.2020.06.002">https://doi.org/10.1016/j.pt.2020.06.002</a></p> <p>Okamura, T. and Kondo, R., 2015. Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan. Protist, 166(4), pp.409-421. <a href="https://doi.org/0.1016/j.protis.2015.06.003">https://doi.org/0.1016/j.protis.2015.06.003</a></p> <p>Patterson, D., 1999. The Diversity of Eukaryotes. The American Naturalist 154(supplement):S96-S124. <a href="https://doi.org/10.2307/2463980">https://doi.org/10.2307/2463980</a></p> <p>Patterson, D.J. and Simpson, A.G., 1996. Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. European Journal of Protistology, 32(4), pp.423-448. <a href="https://doi.org/10.1016/S0932-4739(96)80003-4">https://doi.org/10.1016/S0932-4739(96)80003-4</a></p> <p>Preuss, M., Nelson, W.A. and Zuccarello, G.C., 2017. Red algal parasites: a synopsis of described species, their hosts, distinguishing characters and areas for continued research. Botanica Marina, 60(1), pp.13-25. <a href="https://doi.org/10.1515/bot-2016-0044">https://doi.org/10.1515/bot-2016-0044</a></p> <p>Price D.C., Steiner J.M., Yoon H.S., Bhattacharya D., L&ouml;ffelhardt W. (2016) Glaucophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_42-1">https://doi.org/10.1007/978-3-319-32669-6_42-1</a></p> <p>Raghukumar, S., &amp; Balasubramanian, R. (1991). Occurrence of thraustochtrid fungi in corals and mucus. Indian Journal of Marine Science, 20, 176&ndash;181.</p> <p>Richter, D.J., Nitsche, F., 2016. Choanoflagellatea, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1&ndash;19. <a href="https://doi.org/10.1007/978-3-319-32669-6_5-1">https://doi.org/10.1007/978-3-319-32669-6_5-1</a></p> <p>Rueckert, S., Pipaliya, S. V., &amp; Dacks, J. B. (2019). Evolution: parallel paths to parasitism in the apicomplexa. Current Biology 29(17):R836-R839. <a href="https://doi.org/10.1016/j.cub.2019.07.047">https://doi.org/10.1016/j.cub.2019.07.047</a></p> <p>Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. 2006. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. J Eukaryot Microbiol. 53(5):379-84. <a href="https://doi.org/10.1111/j.1550-7408.2006.00118.x">https://doi.org/10.1111/j.1550-7408.2006.00118.x</a></p> <p>Sahoo, D., Kumar, S., 2015. Xanthophyceae, Euglenophyceae and Dinophyceae, in: Sahoo, D., Seckbach, J. (Eds.), The Algae World, Cellular Origin, Life in Extreme Habitats and Astrobiology. Springer Netherlands, Dordrecht, pp. 259&ndash;305. <a href="https://doi.org/10.1007/978-94-017-7321-8_9">https://doi.org/10.1007/978-94-017-7321-8_9</a></p> <p>Schnepf E. 1994. Light and electron microscopical observations in Rhynchopus coscinodiscivorus spec. nov., a colorless, phagotrophic euglenozoon with concealed flagella. Arch. Protistenk. 144:63&ndash;74. <a href="https://doi.org/10.1016/S0003-9365(11)80225-3">https://doi.org/10.1016/S0003-9365(11)80225-3</a></p> <p>Scoble, J. M., &amp; Cavalier-Smith, T. (2014). Scale evolution in Paraphysomonadida (Chrysophyceae): Sequence phylogeny and revised taxonomy of Paraphysomonas, new genus Clathromonas, and 25 new species. European Journal of Protistology 50:551&ndash;592. <a href="https://doi.org/10.1016/j.ejop.2014.08.001">https://doi.org/10.1016/j.ejop.2014.08.001</a></p> <p>Sebastian Hess. 2017. Hunting for agile prey: trophic specialisation in leptophryid amoebae (Vampyrellida, Rhizaria) revealed by two novel predators of planktonic algae, FEMS Microbiology Ecology 93(9):fix104. <a href="https://doi.org/10.1093/femsec/fix104">https://doi.org/10.1093/femsec/fix104</a></p> <p>Sekiguchi, H., Kawachi, M., Nakayama, T., Inouye, I., 2003. A taxonomic re-evaluation of the Pedinellales (Dictyochophyceae), based on morphological, behavioural and molecular data. Phycologia 42, 165&ndash;182. <a href="https://doi.org/10.2216/i0031-8884-42-2-165">https://doi.org/10.2216/i0031-8884-42-2-165</a></p> <p>Sekiguchi, H., Moriya, M., Nakayama, T. and Inouye, I., 2002. Vestigial chloroplasts in heterotrophic stramenopiles Pteridomonas danica and Ciliophrys infusionum (Dictyochophyceae). Protist, 153(2):157-167. <a href="https://doi.org/10.1078/1434-4610-00094">https://doi.org/10.1078/1434-4610-00094</a></p> <p>Shields, J.D., 1994. The parasitic dinoflagellates of marine crustaceans. Annual Review of Fish Diseases 4, 241&ndash;271. <a href="https://doi.org/10.1016/0959-8030(94)90031-0">https://doi.org/10.1016/0959-8030(94)90031-0</a></p> <p>Shin, W., Jeong, M., Kim, J.I. and Nam, S.W., 2021. Molecular Phylogeny and Taxonomy of the Genus Spumella (Chrysophyceae) Based on Morphological and Molecular Evidence. Frontiers in Plant Science 12:2424. <a href="https://doi.org/10.3389/fpls.2021.758067">https://doi.org/10.3389/fpls.2021.758067</a></p> <p>Simpson A.G.B. (2016) Jakobida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_6-1">https://doi.org/10.1007/978-3-319-32669-6_6-1</a></p> <p>Simpson, A. G., &amp; Patterson, D. J. (1996). Ultrastructure and identification of the predatory flagellate Colpodella pugnax Cienkowski (Apicomplexa) with a description of Colpodella turpis n. sp. and a review of the genus. Systematic Parasitology 33(3):187-198.</p> <p>Skovgaard, A., Karpov, S.A. and Guillou, L., 2012. The parasitic dinoflagellates Blastodinium spp. inhabiting the gut of marine, planktonic copepods: morphology, ecology, and unrecognized species diversity. Frontiers in microbiology, 3, p.305. <a href="https://doi.org/10.3389/fmicb.2012.00305">https://doi.org/10.3389/fmicb.2012.00305</a></p> <p>Stephenson S.L., Schnittler M. (2016) Myxomycetes. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_44-1">https://doi.org/10.1007/978-3-319-32669-6_44-1</a></p> <p>Str&uuml;der-Kypke, M.C., Wright, A.D.G., Jerome, C.A. and Lynn, D.H., 2001. Parallel evolution of histophagy in ciliates of the genus Tetrahymena. BMC Evolutionary Biology, 1(1):1-9. <a href="https://doi.org/10.1186/1471-2148-1-5">https://doi.org/10.1186/1471-2148-1-5</a></p> <p>Vavra, J. and Kucera, K., 1970. Pneumocystis carinii Delanoe, its ultrastructure and ultrastructural affinities. The Journal of protozoology, 17(3), pp.463-483. <a href="https://doi.org/10.1111/j.1550-7408.1970.tb04715.x">https://doi.org/10.1111/j.1550-7408.1970.tb04715.x</a></p> <p>Vot&yacute;pka J., Modr&yacute; D., Oborn&iacute;k M., &Scaron;lapeta J., Luke&scaron; J. (2016) Apicomplexa. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_20-1">https://doi.org/10.1007/978-3-319-32669-6_20-1</a></p> <p>Walker, G., Dorrell, R., Schlacht, A., Dacks, J., 2011. Eukaryotic systematics: A user__s guide for cell biologists and parasitologists. Parasitology 138, 1638&ndash;63. <a href="https://doi.org/10.1017/S0031182010001708">https://doi.org/10.1017/S0031182010001708</a></p> <p>Wetherbee, R., Jackson, C.J., Repetti, S.I., Clementson, L.A., Costa, J.F., van de Meene, A., Crawford, S. and Verbruggen, H., 2019. The golden paradox&ndash;a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of phycology, 55(2), pp.257-278. <a href="https://doi.org/10.1111/jpy.12822">https://doi.org/10.1111/jpy.12822</a></p> <p>Yoon H.S. et al. (2016) Rhodophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_33-1">https://doi.org/10.1007/978-3-319-32669-6_33-1</a></p>

opencc-zeroAug 2024View details →
zenodo40/100

Fig. 1 in Trophic guilds of fishes in sandbank habitats of a Neotropical river

Fig. 1. Scores for the fish species (a) and their food items (b) along Axes 1 and 2, derived from detrended correspondence analysis (DCA). The circles in (a) indicate the groups determined by the k-means analysis.

opencc-by-4.0Sep 2007View details →
zenodo40/100

Fig. 2 in Trophic guilds of fishes in sandbank habitats of a Neotropical river

Fig. 2. Proportions of terrestrial, aquatic, and undetermined resources used by the fish trophic groups.

opencc-by-4.0Sep 2007View details →
zenodo40/100

Fig. 3 in Trophic guilds of fishes in sandbank habitats of a Neotropical river

Fig. 3. Food resource availability, inferred from the volume of items in the stomachs analyzed for all species combined.

opencc-by-4.0Sep 2007View details →
zenodo36/100

Figure 6 in Dynamic of fish trophic guilds in the plateau-plain gradient in the Paraguay River, Northern Pantanal

Figure 6. Difference between trophic guilds in the sampled segments in Paraguay River. (A) herbivores. (B) piscivores. (C) invertivores. * indicates statistical difference at the 0.05 significance level.

opencc-by-nc-4.0Aug 2022View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record