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Dataset results
32 results for “web platform”
easyMF: A Web Platform for Matrix Factorization-based Biological Discovery from Large-scale Transcriptome Data
<p>With the development of high-throughput experimental technologies, large-scale RNA sequencing (RNA-Seq) data have been and continue to be produced, but have led to challenges in extracting relevant biological knowledge hidden in the produced high-dimensional gene expression matrices. Here, we present easyMF, a user-friendly web platform that aims to facilitate biological discovery from large-scale transcriptome data through matrix factorization (MF). The easyMF platform enables users with little bioinformatics experience to streamline transcriptome analysis from raw reads to gene expression and to decompose expression matrix from thousands of genes to a handful of metagenes. easyMF also offers a series of functional modules for metagene-based exploratory analysis with an emphasis on functional gene discovery. As a modular, containerized and open-source platform, easyMF can be customized to satisfy users’ specific demands and deployed as a web server for broad applications. easyMF is freely available at https://github.com/cma2015/easyMF. We demonstrated the application of easyMF with four case studies using 940 RNA sequencing datasets from maize (<em>Zea mays </em>L<em>.</em>).</p>
Generative AI in Crowdwork for Web and Social Media Research: A Survey of Workers at Three Platforms
<p>Data generated for the paper "<span>Generative AI in Crowdwork for Web and Social Media Research:</span><br><span>A Survey of Workers at Three Platforms</span>" presented at ICWSM 2024.</p>
GeMo : a web-based platform for the visualization and curation of mosaic genomes
<p>Dataset that will be used by TraceAncestor or by VCFHunter.</p> <p><strong>Reference for dataset</strong></p> <ul> <li> <p><a href="https://doi.org/10.1093/molbev/msy199">Baurens,F.-C. et al.(2019) Recombination and Large Structural Variations Shape Interspecific Edible Bananas Genomes. Mol Biol Evol, 36, 97–111.</a></p> </li> <li> <p><a href="https://doi.org/10.1111/tpj.14683">Martin et al., 2020a. Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, Perrier X, Glaszmann J-C, D’Hont A, Yahiaoui N. 2020. Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Plant J. 102:1008–1025.</a></p> </li> <li> <p><a href="https://doi.org/10.1093/aob/mcz029">Ahmed,D. et al. (2019) Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus. Annals of Botany, 123, 1231–1251.</a></p> </li> </ul>
Supplementary data for "DNATCO v5.0: Integrated Web Platform for 3D Nucleic Acid Structure Analysis"
<p>Supplementary data for "DNATCO: efficient and accurate analysis of nucleic acid structures"</p> <p>The data in "dnatco.datmos.org_1ehz_4qvi_5hix.zip" contains the DNATCO-annotated extended mmCIF files, full validation reports and NtC-specific restraint files for the three example PDB structures (1ehz, 4qvi, and 5hix) is deposited.</p> <p>A snapshot of the core structure processing library source code from the https://github.com/cernylab/libLLKA repository is included in the "libLLKA-main.zip" file.</p> <p>The fully offline multi-platform CLI version of the dnatco.datmos.org using Node.js is provided in the "dnatco.zip" file</p>
An Interactive Web Platform to Teach Children Hunting, Shooting and Firearms Safety
ClinicalTrials.gov study NCT04622943. IPD Sharing: YES. Countries: 1. Publications: 2.
Evaluation of a Crowd-Powered Web Platform for Depression and Anxiety
ClinicalTrials.gov study NCT04226742. IPD Sharing: YES. Countries: 1. Publications: 27.
Piveau: A Large-scale Open Data Management Platform based on Semantic Web Technologie
<p>This file contains the sources that were used to create the feature comparison in "Piveau: A Large-scale Open Data Management Platform based on Semantic Web Technologies".</p>
Questionnaire and Results for the "Gamify-IT - A Web-Based Gaming Platform for Software Engineering Education" Paper
<p>This archive contains the questions and results of our questionnaire to evaluate the prototype Gamify-IT e-learning platform. The questionnaire contains 18 questions and statements to evaluate the students' experience with the platform. We conducted the evaluation with students of our programming introductory course at the University of Stuttgart. 20 students provided their feedback. Results are anonymized.</p>
Optimizing Maintenance for Patients with COPD Via a Web Platform - Case Study
ClinicalTrials.gov study NCT04284865. IPD Sharing: NO. Countries: 1. Publications: 1.
Comparing the Use of a Mobile App for Surveillance of Adverse Events Following Influenza Immunization to a Web-Based Platform
ClinicalTrials.gov study NCT05794113. IPD Sharing: NO. Countries: 1. Publications: 1.
Interactive Web Platform for EmPOWERment in Early Multiple Sclerosis
ClinicalTrials.gov study NCT03968172. IPD Sharing: YES. Countries: 1. Publications: 1.
A Web-based Platform to Conduct Trials of mHealth Apps for Hypertension
ClinicalTrials.gov study NCT04528654. IPD Sharing: NO. Countries: 1. Publications: 1.
Adaptation of an eHealth (Web-application) Platform for Delivery of a Sedentary Behavior Intervention Among Prostate Cancer Patients
ClinicalTrials.gov study NCT03740035. IPD Sharing: NO. Countries: 1. Publications: 50.
Evaluation of a Web-based Platform for Osteoarthritis Treatment
ClinicalTrials.gov study NCT03328741. IPD Sharing: YES. Countries: 1. Publications: 1.
PROMBot: a Web Platform for Collecting Outcomes for Hypertension Patients Via a Chatbot
ClinicalTrials.gov study NCT06845007. IPD Sharing: NO. Countries: 1. Publications: 8.
Effect of Problem-solving Therapy Offered Through a Web Platform on Levels of Stress
ClinicalTrials.gov study NCT04016883. IPD Sharing: NO. Countries: 1. Publications: 2.
Usage Requirements on Recommender Systems for a Web Platform for Continuing Education in Public Transport in Germany
<p>The dataset contains usage requirements on recommender systems for a web platform for continuing education in public transport in Germany. The underlying data was collected in 28 stakeholder interviews. </p>
PainTracker Self-Manager: a Web-based Platform to Promote and Track Chronic Pain Self-management
ClinicalTrials.gov study NCT03045081. IPD Sharing: NO. Countries: 1. Publications: 0.
Effects of an mHealth Web-Based Platform (HappyAir) on Adherence to a Maintenance Program After Pulmonary Rehabilitation in Patients With Chronic Obstructive Pulmonary Disease
ClinicalTrials.gov study NCT04479930. IPD Sharing: NO. Countries: 0. Publications: 1.
Data from: A web platform for landuse, climate, demography, hydrology and beach erosion in the Black Sea catchment
The Black Sea catchment (BSC) is facing important demographic, climatic and landuse changes that may increase pollution, vulnerability and scarcity of water resources, as well as beach erosion through sea level rise. Limited access to reliable time-series monitoring data from environmental, statistical, and socio-economical sources is a major barrier to policy development and decision-making. To address these issues, a web-based platform was developed to enable discovery and access to key environmental information for the region. This platform covers: landuse, climate, and demographic scenarios; hydrology and related water vulnerability and scarcity; as well as beach erosion. Each data set has been obtained with state-of-the-art modelling tools from available monitoring data using appropriate validation methods. These analyses were conducted using global and regional data sets. The data sets are intended for national to regional assessments, for instance for prioritizing environmental protection projects and investments. Together they form a unique set of information, which lay out future plausible change scenarios for the BSC, both for scientific and policy purposes.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.