Cohort-to-Aim Planner

Map grant aims to animal cohorts, identify sharing opportunities, and generate a breeding schedule. Quantify 3Rs reduction from cohort overlap.

Academic Lab WorkflowsColony PlanningClient-Side
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Load example cohort-to-aim planner data to see the full workflow

Colony Parameters

Aim 1

Required fields
  • Aim 1: name is required.
  • Aim 1: sample size must be at least 1.
  • Aim 1: start date must be YYYY-MM-DD format.
  • Multi-aim grant applications (R01, P01, U-series) with overlapping animal needs
  • IACUC protocols requiring 3Rs justification for cohort sharing
  • Breeding colony planning across multiple concurrent studies
  • Timeline planning for when to set up breeding pairs

Don't use for

  • Single-aim studies with one cohort (use Colony Expansion Forecaster instead)
  • Studies not requiring age-matched cohorts
  • Non-rodent species with different breeding parameters

Optimizing Animal Use Across Multiple Grant Aims

Multi-aim grants (R01, P01, U-series) often require overlapping animal resources that can be consolidated:

Cohort overlap principle: If two aims need the same genotype, sex, and similar age, breeding a single larger cohort is more efficient than two independent cohorts. The breeding colony produces animals in litters — coordinating birth timing across aims maximizes the use of each litter.
Sequential reuse: When a longitudinal aim finishes before another aim starts, the surviving animals can transfer to the new aim. This directly reduces total animal numbers and is a strong 3Rs (Reduction) argument for IACUC and NIH reviewers.
Breeding lead time: Mouse gestation is ~21 days, weaning at ~21 days, genotyping takes ~7 days. From pair setup to experiment-ready animals is approximately 7–10 weeks plus the target age. Planning backwards from each aim's start date determines when breeding pairs must be set up.
Practical considerations: Aims requiring different sexes from the same genotype naturally share a breeding cohort — males go to one aim, females to another. This is often the largest source of "free" reduction in multi-aim grants.

Frequently Asked Questions