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FOCUS 0.31 taxonomic profiling of the CAMI 2 Mouse Gut Toy data set, samples 0-63

<strong>Software: </strong>FOCUS<br><strong>SoftwareVersion: </strong>0.31<br><strong>DataURL: </strong> https://data.cami-challenge.org/participate<br><strong>SoftwareURL:</strong> https://github.com/metageni/FOCUS<br><strong>DockerImage:</strong> stefanjanssen/docker_profiling_tools:focus<br><strong>IsBiobox:</strong> True<br><strong>BioboxYAMLFile:</strong> https://zenodo.org/record/3629567/files/biobox.yaml?download=1<br><strong>ReferenceDatabase:</strong> k8_bacterial_and_draft<br><strong>ShortReadsUsed:</strong> True<br><strong>LongReadsUsed:</strong> False<br><strong>CommandsUsed:</strong> docker run \<br>--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \<br>--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \<br>--volume="/path/to/output:/bbx/mnt/output:rw" \<br>--volume="/path/to/output/metadata:/bbx/metadata:rw" \<br>--volume="/path/to/output/cache:/cache:rw" \<br>stefanjanssen/docker_profiling_tools:focus

ShareScore

32/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
16
Reuse readiness
0
Engagement
4

Topics