Testing performance of microbial variant callers

<p>The repository contains duplex consensus sequences used for testing three variant callers:</p> <ol> <li>FreeBayes</li> <li>Mutect2</li> <li>loFreq</li> </ol> <p>The data is derived from <a href="https://academic.oup.com/gbe/article/11/10/3022/5572121">Mei et al. 2019</a>.&nbsp;</p> <p>Gzipped fastq files correspond to time points s0 (0 hours) and s5 (60 hours) as shown in <a href="https://academic.oup.com/view-large/figure/165998113/evz197f1.tif">Fig. 1</a>&nbsp;of the publication. s0 appears to have no variation, while s5 contains variants in the plasmid copy number control region.&nbsp;</p>