Alternate genome assemblies of Halicephalobus mephisto
<p>Alternate genome assemblies were generated using Illumina data from a published study (Weinstein et al, 2019) publicly available on Sequence Reads Archive (SRA) at accession PRJNA528747. Assemblies were generated with either Platanus or SoapDenovo2 using varying step-sizes (Platanus) or kmers (SoapDenovo2) and using either a 1kb or 200bp cutoff on scaffold lengths. These assemblies were then analyzed in a separate study (under review) to identify regional expansions or contractions associated with high levels of heterozygosity.</p> <p>Cited:</p> <p>Weinstein, D.J., Allen, S.E., Lau, M.C.Y. <em>et al.</em> The genome of a subterrestrial nematode reveals adaptations to heat. <em>Nat Commun</em> <strong>10, </strong>5268 (2019). https://doi.org/10.1038/s41467-019-13245-8</p>
ShareScore
24/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 0
- Engagement
- 0