Raw images used for colony classification
<p>Raw images of plates with yeast colonies used in Figure 2 of "Carl et al. A fully automated deep learning pipeline for high-throughput colony segmentation and classification" (Biology Open 2020 : bio.052936 doi: 10.1242/bio.052936 Published 2 June 2020). The paper describes the development of a novel computational pipeline for colony segmentation and classification that achieves accuracy comparable to human performance.</p> <p>The actual data was generated in a project that was published earlier (Duempelmann, L. e<em>t al. </em>Inheritance of a Phenotypically Neutral Epimutation Evokes Gene Silencing in Later Generations. <em>Molecular Cell</em> <strong>74, 3</strong> (2019).) The experiments were testing trans-generational inheritance of <em>ade6<sup>+</sup> </em>silencing in <em>Schizosaccharomyces pombe</em>. <em>ade6<sup>+</sup></em> silencing was first induced by expression of small interfering RNAs (siRNAs) that are complementary to the <em>ade6<sup>+</sup></em> gene in a <em>paf1-Q264Stop</em> nonsense-mutant background, leading to red colonies. Paf1 is a subunit of the Paf1 complex (Paf1C), which represses siRNA-induced heterochromatin formation in <em>S. pombe</em>.</p>
ShareScore
40/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 4