Transcription initiation peaks based on FANTOM5 CAGE data on rn6, canFam3, and galGal5

<p><strong>Overview</strong></p> <p>Decomposition-based peak identification (DPI, https://github.com/hkawaji/dpi1) is applied to the FANTOM5 data of rat (rn3), dog (canFam3), and chicken (galGal5):</p> <ul> <li>https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/</li> </ul> <p>The same parameters to the ones used in the previous paper (Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462&ndash;470, 2014) was used.</p> <p><strong>Data files</strong></p> <p>Four data files per assembly are prepared as below.</p> <ol> <li>tag cluster in the original definition (*.tc.bed.gz)</li> <li>full set of DPI peaks (*.tc.decompose_smoothing_merged.bed.gz)</li> <li>permissive set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts3.bed.gz)</li> <li>robust set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.bed.gz)</li> </ol> <p><strong>Acknowledgement</strong></p> <p>This data set is supported by Research Grant from MEXT to RIKEN Preventive Medicine and Diagnosis Innovation Program, RIKEN Center for Integrative Medical Sciences, and JSPS KAKENHI Grant-in-Aid for Scientific Research No. 16H02902.</p>