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zenodoopen

Raw data for comparison of bioinformatics pipelines for Diatom DNA metabarcoding for ecological assessment

<p>This archive contains the raw .fatsq files for&nbsp;29 samples from&nbsp;water bodies (lakes and rivers) located in Nordic countries (Sweden, Finland, Norway)&nbsp;sequenced on Illumina MiSeq, with the 18S-V4 marker&nbsp;and with the <em>rbc</em>L marker. For both marker two separate datasets are provided, containing the&nbsp;F and R fragments ( R1 and R2). The&nbsp;samples tags and primer sequences are also provided.</p> <p>The archive also contains the custom curated reference database used for the taxonomic identification using bioinformatics pipeline. For both marker, two files are provided: an .rarl file with the sequences and sequence ID and a .tax file with the taxonomic information associated.&nbsp;</p>

ShareScore

28/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
16
Reuse readiness
0
Engagement
0

Topics

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