Raw data for comparison of bioinformatics pipelines for Diatom DNA metabarcoding for ecological assessment
<p>This archive contains the raw .fatsq files for 29 samples from water bodies (lakes and rivers) located in Nordic countries (Sweden, Finland, Norway) sequenced on Illumina MiSeq, with the 18S-V4 marker and with the <em>rbc</em>L marker. For both marker two separate datasets are provided, containing the F and R fragments ( R1 and R2). The samples tags and primer sequences are also provided.</p> <p>The archive also contains the custom curated reference database used for the taxonomic identification using bioinformatics pipeline. For both marker, two files are provided: an .rarl file with the sequences and sequence ID and a .tax file with the taxonomic information associated. </p>
ShareScore
28/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 0
- Engagement
- 0
Topics
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