Plant_Innate_Immunity_ATAC-seq

<p><strong>Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors</strong></p> <p>Ding et al 2020</p> <p>This repository stored all&nbsp;input dataset &amp; output dataset except bam files.</p> <p>To make bam files, raw read data are stored in accession number&nbsp;PRJEB38923.</p> <ul> <li>ACR_annotation.zip, Correlation_replicates.zip, Integrate_ATAC-seq_and_RNA-seq.zip, Motif_binding_analysis.zip ... input/output files for each analysis.</li> <li>other zip files ... output files of MACS (call ACRs, call DARs)</li> <li>These outputs are generated by scripts stored in github. (<a href="https://github.com/slt666666/Plant_Innate_Immunity_ATAC-seq">https://github.com/slt666666/Plant_Innate_Immunity_ATAC-seq</a>)</li> </ul>