GREEN-VARAN SV annotation resources

<p>This&nbsp;dataset contains a collection of BED files prepared to&nbsp;be used with the SV_annotation tool, part of GREEN-VARAN.</p> <p><strong>GREEN-DB regions</strong></p> <p>Regulatory regions collected in GREEN-DB (see <a href="https://github.com/edg1983/GREEN-VARAN">https://github.com/edg1983/GREEN-VARAN</a>)</p> <p><strong>Population AF annotations</strong></p> <p>These files represent&nbsp;SVs from gnomAD v.2.1.1, 1000G phase3, and the IMH dataset. When not directly available, the GRCh38 versions are obtained by coordinates liftover from GRCh37.</p> <p>If you use&nbsp;AF&nbsp;annotations&nbsp;don&#39;t forget to cite also the original papers:</p> <ul> <li>gnomAD paper as described in <a href="https://gnomad.broadinstitute.org/terms">https://gnomad.broadinstitute.org/terms</a></li> <li>1000G SV paper:&nbsp;<a href="https://www.nature.com/articles/nature15394">https://www.nature.com/articles/nature15394</a></li> <li>the original IMH publication&nbsp;<a href="https://www.nature.com/articles/s41586-020-2371-0">https://www.nature.com/articles/s41586-020-2371-0</a></li> </ul> <p><strong>Gene annotations</strong></p> <p>Genes and CDSs annotations are from GENCODE v33 basic set</p>