Genome-wide haplotype counting in diatoms S. robusta and P. tricornutum - processed datasets

<p><strong>Datasets used for genome-wide haplotype counting in <em>S. robusta</em> and <em>P. tricornutum</em> next-generation sequencing data.</strong></p> <p>For <em>S. robusta</em> and <em>P. tricornutum </em>genome-wide haplotype counting, reliable SNPs set was first identified in ILLUMINA short-read sequencing datasets and then used for counting of the number of haplotypes in the PacBio RS II and MinION long reads. The ILLUMINA and PacBio data of <em>S. robusta</em> were downloaded from <a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB36614">https://www.ebi.ac.uk/ena/browser/view/PRJEB36614</a> and ILLUMINA and Minion data of <em>P. tricornutum</em> were downloaded from <a href="https://www.ebi.ac.uk/ena/browser/view/PRJNA487263">https://www.ebi.ac.uk/ena/browser/view/PRJNA487263</a>.</p> <p>Reference genome assembly for<em> S.&nbsp;robusta</em>: CAICTM010000001-CAICTM010004752 (European Nucleotide Archive) and</p> <p>Reference genome assembly for<em> P. tricornutum</em>: GCA_000150955.2 (European Nucleotide Archive).</p> <p>Uploaded files:&nbsp;</p> <p>-.bam files containing S. robusta PacBio self-corrected CCS reads aligned to reference and processed and P. tricornutum self-corrected MinION reads aligned to reference and processed:&nbsp;&nbsp;</p> <p><em>S_robusta_aligned_corrected_PacBio_reads.bam</em></p> <p><em>P_tricornutum_aligned_corrected_MinION_reads.bam</em></p> <p>-.table files with selected reliable SNPs used for haplotype counting with CHROM, POSITION, REFERENCE and ALTERNATIVE allele&nbsp;</p> <p><em>S_robusta_SNPs.table</em></p> <p><em>P_tricornutum_SNPs.table</em></p> <p>&nbsp;</p>