Systems level profiling of chemotherapy-induced stress resolution reveals druggable trade-offs

<p>Directory structure:</p> <p>--[ROOT]</p> <p>----[Kallisto] 50x bootstraped Kallisto-derived estimated counts</p> <p>----[Library] transcript-to-gene mapping for tximport</p> <p>----[Metabolomics] normalised metabolyte levels from service provider (Metabolon Inc.)</p> <p>----[Proteomics] normalised protein levels from service provider (Francis Crick Institute)</p> <p>----RNAseq.R, produce RNA-seq counts and abundances from Kallisto data</p> <p>----Metabolomics.R, input + transform + QC metabolomics data</p> <p>----Proteomics.R, input + QC proteomics da</p>