Combining StarDist and TrackMate example 1 - Breast cancer cell dataset
<p><strong>Description</strong>: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)</p> <p><strong>Training dataset</strong>: 72 Paired microscopy images (fluorescence) and corresponding masks</p> <p><strong>Microscopy data type</strong>: Fluorescence microscopy (SiR-DNA) and masks obtained via manual segmentation (see <a href="https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist">https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist</a> for details about the segmentation)</p> <p><strong>Microscope</strong>: Spinning disk confocal microscope with a 20x 0.8 NA objective</p> <p><strong>Cell type</strong>: DCIS.COM Lifeact-RFP cells</p> <p><strong>File format</strong>: .tif (16-bit for fluorescence and 8 and 16-bit for the masks)</p> <p><strong>Image size</strong>: 1024x1024 (Pixel size: 634 nm)</p>
ShareScore
28/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 0
- Engagement
- 4