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sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

<p>sQTL catalog generated by <a href="https://github.com/guigolab/sqtlseeker2-nf">sqtlseeker2-nf</a> in the <a href="https://www.gtexportal.org/home/">GTEx</a> dataset, as described in the publication<em> Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome</em> by Garrido-Mart&iacute;n et al. in Nat. Commun. (<a href="https://doi.org/10.1038/s41467-020-20578-2">https://doi.org/10.1038/s41467-020-20578-2</a>). It contains the results of the sqtlseeker2-nf pipeline, run using different input data: i) RSEM transcript quantifications and genotype data from GTEx V7, ii) LeafCutter intron excision ratios and genotype data from GTEx V7 and iii) RSEM transcript quantifications and genotype data from GTEx V8. For each GTEx tissue, it includes summary statistics corresponding to all the tests performed (both nominal and permutation passes) and the significant sQTLs identified.</p> <p>&nbsp;</p>

ShareScore

24/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
16
Reuse readiness
0
Engagement
0

Dataset details

Repository
zenodo
Published
October 3, 2020
License
cc-by-4.0
DOI
10.5281/zenodo.4058758

Scored with release 0.9.0

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