Skip to main content
zenodoopen

U2- and U12-type intron classifications for Physarum polycephalum in BED format

<p>A BED file containing intron information for <em>Physarum polycephalum</em>&nbsp;introns classified as U2- or U12-type by <a href="https://github.com/glarue/intronIC">intronIC</a>. This data is associated with the following manuscript:&nbsp;https://doi.org/10.1101/2020.10.12.336362; the genome and annotation file&nbsp;used to identify the introns are available here:&nbsp;https://doi.org/10.5281/zenodo.4086119.</p> <p>&nbsp;</p> <p>The file columns are:</p> <p>1. Genome FASTA record name (scaffold)</p> <p>2. Intron start coordinate (0-indexed)</p> <p>3. Intron end coordinate (1-indexed)</p> <p>4. Intron label from intronIC</p> <p>5. U12-type probability score (0-100); introns with scores &gt; 95 were considered U12-type in the manuscript</p> <p>6. Strand</p>

ShareScore

48/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
20
Reuse readiness
8
Engagement
8

Topics