Dataset and code release for "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia"

<p>This upload contains the raw DArTseq data and code for reproducible analysis and production of output tables and plots to accompany the publication &quot;Current population structure and pathogenicity patterns of <em>Ascochyta rabiei</em> in Australia&quot;.<br> The analysis is performed primarily in R and is run using the `A_rabiei_DArT.R` file.</p> <p>A version-controlled repository of this upload is maintained at GitHub at the following link: <a href="https://github.com/IdoBar/A_rabiei_DArT">https://github.com/IdoBar/A_rabiei_DArT</a></p> <p>The archived file is structured as follows:</p> <ul> <li>Main analysis code is in <strong>A_rabiei_DArT.R</strong></li> <li>Raw DArTseq data and <em>A. rabiei</em> isolate metadata can be found in in the <strong><em>data </em></strong>folder</li> <li>Output tables and plots in <em><strong>output</strong></em> folder</li> <li>General information (partial and slightly outdated) in the markdown <strong>A_rabiei_DArT.Rmd </strong>and knitted <strong>A_rabiei_DArT.html </strong>files</li> <li>Australian chickpea production stats and figures in <strong>Chickpea_production.R</strong></li> </ul>