zenodoopen
R script for identification and localisation of prophage within bacterial genomes using outward-oriented paired-end reads.
<p>This R script shows an analysis example of using outwards-oriented paired-end reads (OPRs), identified using the OPR finder function in the mVIRs package, to identify p22 in <em>S</em>. Tm LT2 as described in the publication "<strong>High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains" </strong>by Zünd et al. Microbiome (2021)</p>
ShareScore
40/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 4
Topics
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