Neuronal cell labelled with anti PSD95 and homer antibodies - sample image for software testing of Easy SODA
<p><strong>Hippocampal neurons</strong> in culture seeded on glass coverslip. This 16 bits confocal picture of hippocampal neuron in culture has been taken at 63x (1024x1024 pixels - pixel size 92,45 nm) in sequential mode with two channels : one dedicated to the PSD95 protein, and the other one to Homer protein. Those protein are expressed at glutamatergic post-synaptic sites and can be found close within Post Synaptic Density. This is a good sample to test colocalization and association analysis. The homer channel can be used both to infere neuronal shape thanks to hk-means segmentation (<a href="http://icy.bioimageanalysis.org/protocol/easy-cell-shape-with-hk-means/">http://icy.bioimageanalysis.org/protocol/easy-cell-shape-with-hk-means/</a>), or to detect clusters thanks to wavelet segmentation (<a href="http://icy.bioimageanalysis.org/protocol/rainbow-spot-detector-scale-finder/">http://icy.bioimageanalysis.org/protocol/rainbow-spot-detector-scale-finder/</a>). This sample image can be used with Easy SODA protocol (Standard Object Distance Analysis) on Icy software (<a href="http://icy.bioimageanalysis.org/protocol/easy-soda-2-colors-1-image/">http://icy.bioimageanalysis.org/protocol/easy-soda-2-colors-1-image/) </a>to detect association between PSD95 and homer clusters.</p>
ShareScore
28/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 0
- Engagement
- 0