Data for "CryoDRGN: Reconstruction of heterogeneous cryo-EM structures using neural networks"
<p>Trained models and reconstructed density maps for:</p> <ul> <li>EMPIAR-10028: "Cryo-EM structure of a <em>Plasmodium falciparum</em> 80S ribosome bound to the anti-protozoan drug emetine" from Wong et al. (2014)</li> <li>EMPIAR-10049: "Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures" from Ru et al. (2015)</li> <li>EMPIAR-10076: "Modular assembly of the large bacterial ribosome" from Davis et al. (2016)</li> <li>EMPIAR-10180: "Structure of a pre-catalytic spliceosome" from Plaschka et al. (2017)</li> </ul> <p>Synthetic datasets with simulated heterogeneity and their ground truth density maps, poses, and labels:</p> <ul> <li>Uniform: 50k particle images (128x128, 6A/pix) uniformly sampled from 50 models along a 1-dimensional reaction coordinate</li> <li>Cooperative: 50k particle images (128x128, 6A/pix) sampled along the above reaction coordinate according to a 3-component Gaussian mixture model with overlapping components </li> <li>Noncontiguous: 50k particle images (128x128, 6A/pix) sampled along the above reaction coordinate according to a 3-component Gaussian mixture model without overlapping components</li> <li>Ribosomes: 50k particle images (128x128, 3A/pix) containing a mixture of 30S, 50S, 70S ribosomes simulating compositional heterogeneity</li> </ul>
ShareScore
32/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
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