Simulated NGS datasets for real-time detection of novel pathogens

<p>Datasets based on the <a href="https://doi.org/10.5281/zenodo.3678563">bacterial</a> and <a href="https://doi.org/10.5281/zenodo.4312525">viral</a> simulated NGS datasets. Fastq files correspond to tests sets of those datasets. Basecall files were generated based on the fastq files with an 8nt simulated barcode between the mates of a read pair. The &quot;rn&quot; datasets containg random length subreads (25-250bp) of the original validation and training reads.</p> <p>The Nanopore datasets were resimulated with <a href="https://github.com/liyu95/DeepSimulator">DeepSimulator 1.5</a> (Li et al., 2020) based on the original datasets (i.e. using the same species composition as the original data). The test Nanopore dataset contains full reads (target average length: 8kb) and the training and validation datasets - 250bp subreads.</p>