Skip to main content
zenodoopen

Data from "Corset: enabling differential gene expression analysis for de novo assembled transcriptomes"

<p>This dataset contains de novo transcriptome assemblies&nbsp;for three publicly available RNA-seq dataset&nbsp;(SRA055442,&nbsp;SRR453566-SRR453571 and&nbsp;GSE37704&nbsp;). For each assembly we also provide a table with the&nbsp;read counts&nbsp;per&nbsp;contig, the output&nbsp;from corset (clusters and counts), and the results from&nbsp;a genome-based analysis. This dataset was used to assess the performance of the corset software. More detail is provided in the paper: Nadia M Davidson&nbsp;and&nbsp;Alicia Oshlack,<strong>&nbsp;</strong>Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, <em>Genome&nbsp;Biology</em>&nbsp;2014,&nbsp;<strong>15</strong>:410.&nbsp;http://genomebiology.com/2014/15/7/410/abstract</p>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
16
Reuse readiness
8
Engagement
4

Topics