Dataset for a Mouse and Rat liver trancriptomic analysis

<p>Data used for the anlaysis. R scripts used can be found on github: https://github.com/gdevailly/liver_mouse_rat</p> <ul> <li>matrixLiverMouse.txt and rat_full_data_matrix.txt contain GEO expression matrix for mouse and rat rexperiments.</li> <li>GSEmouse.txt and GSErat.txt contain experiment IDs from GEO and experiment titles.</li> <li>GEORat.txt and GEOMouse.txt contain experiment IDs and series IDs from GEO.</li> <li>quantNormData_mouse.tsv and quantNormData_rat.tsv contain normalised expression matrices.</li> <li>fileForSCHypeThreshold0.5.txt is the input for SCHype. schype_output_0.5th.nodes.txt and schype_output_0.5th.edges.txt are the outputs.</li> <li>mouse_rat_ampping.txt is the probe mapping used to compare mouse and rat data.</li> <li>geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)</li> </ul>