Public metagenome datasets annotated using SingleM
<p>These data underlie the community profiles shown at <a href="https://sandpiper.qut.edu.au">https://sandpiper.qut.edu.au</a></p> <p> </p> <h2>Changelog</h2> <p>version 1.0.0</p> <ul> <li>Public metagenomes published before Feb 20, 2025 were analysed using SingleM pipe v0.18.3 (the default R220 metapackage), and then renewed using an R226 metapackage (S5.4.0.GTDB_r226.metapackage_20250331).</li> </ul> <p>version 0.3.0</p> <ul> <li>Update profiles to use GTDB R220, generated using SingleM renew v0.17.0.</li> </ul> <p>version 0.2.0</p> <ul> <li>Initial version. Created using a GTDB R214-based reference SingleM metapackage S3.2.1.GTDB_r214.metapackage_20231006 based on public datasets available Dec 15, 2021.</li> </ul>
ShareScore
48/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 8
- Access
- 20
- Reuse readiness
- 8
- Engagement
- 8