Syntaxin 1A Transmembrane Domain Palmitoylation Induces a Fusogenic Conformation

<p>All parameter files to repeat simulations and the code for extract and analyze simulation data in the manuscript titled 'Syntaxin 1A Transmembrane Domain Palmitoylation Induces a Fusogenic Conformation'&nbsp; are included here. Simulation data was extracted by either <em>gromacs</em> or <em>mdtraj</em>&nbsp; package from simulation xtc trajectory files which are too large to provide here. Rather, they will be provided upon reasonable request.</p> <p>All simulations are performed by GROMACS 2021 in Triton supercomputer from Frost Institute for Data Science and Computing (IDSC) in University of Miami.</p> <p>All code files for extract and analyze simulation data are written in python on Jupyter notebooks and notebook files to make plots are run on Google Colab.&nbsp;</p> <p>The version of <em>matplotlib</em> to make plots is 3.7.3, <em>seaborn</em> is 0.11, and the <em>statannotations</em> is 0.6.0.</p>