Mural cells sustain a homeostatic vascular macrophage niche limiting chronic inflammation

<p>If you use any of these data, please cite the corresponding publication:</p><p><a href="https://doi.org/10.1016/j.immuni.2023.08.002">Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation</a><br><a href="https://doi.org/10.1016/j.immuni.2023.08.002">Pekayvaz et al., Immunity, 2023</a> . ( <a href="https://doi.org/10.1016/j.immuni.2023.08.002">https://doi.org/10.1016/j.immuni.2023.08.002</a> )</p><p><strong>scRNA-seq data</strong></p><p><i>processed:</i></p><p>processed_kidney_seurat.Rds<br>processed_lung_seurat.Rds</p><p><i>count matrices:</i></p><p>sample_M1_raw_feature_bc_matrix.h5<br>sample_M2_raw_feature_bc_matrix.h5</p><p><i>script:</i></p><p>process_sctransform.R</p><p>functions.R with helper functions (mainly for plotting) used in the process-script.</p><p><strong>RNA-seq</strong></p><p><i>macrophages:</i></p><p>macs_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)</p><p><i>aorta:</i></p><p>aorta_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)</p><p><i>Dead vs. Living:</i></p><p>peri_Dead_vs_Living.exon_all.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)</p><p>&nbsp;</p>