Customized gtf file from Ensembl version 109 GRCz11 (danRer11)

<p>The gtf from Ensembl version 109 GRCz11 (danRer11) was filtered to remove transcripts on alternative chromosomes, readthrough transcripts and all non-coding transcripts from a protein-coding gene. In addition, all genes with the same gene name which overlaps were merged under the same gene id to avoid ambiguous reads.<br>The procedure to generate the gtf is described in the bash file attached.<br>&nbsp;</p>