Matrix N, TEs vs promoters, weighted with L = 2.5e5kb, hg38

<p>Regulatory susceptibility matrix N, with rows as hg38 protein coding genes and columns as TE subfamilies. For any given gene, regulatory TEs are strictly out of any promoter and any exon belonging to that gene. The contribution of each single TE is weighted by a gaussian kernel centered on the closest promoter of that gene, with a bandwidth L = 2.5e5kb. Since hg38 contains inflated SVA integrants, most of which small fragments unlikely to be of functional importance, we filtered out SVA integrants shorter than 200bp.</p>