Cherri - Accurate detection of functional RNA-RNA interactions sites

<p><strong>CheRRI</strong> - &nbsp;Pipeline for the Identification of putative RNA-RNA interaction sites.</p> <p>&nbsp;</p> <p>This repository contains all CheRRI's models computed and mentioned in the content.txt, listing data and their descriptions. All models can be used to classify interaction sites in CheRRI's eval mode.</p> <p>&nbsp;</p> <p>The source code for CheRRI is avalbile on <a href="https://github.com/BackofenLab/Cherri#install-cherri-conda-package">GitHub</a> and can be cited using this Software Heritage citation:</p> <ul> <li><span>M&uuml;ller T, Mautner S, Videm P, Eggenhofer F, Raden M, Backofen R (2024) CheRRI - Accurate classification of the biological relevance of putative RNA-RNA interaction sites (Version 0.8). [Computer&nbsp;software].&nbsp;Software&nbsp;Heritage, <a href="https://archive.softwareheritage.org/swh:1:snp:ebac091117f9c46fb5f0fedd3ef23ec2905ced6c;origin=https://github.com/BackofenLab/Cherri">https://archive.softwareheritage.org/swh:1:snp:ebac091117f9c46fb5f0fedd3ef23ec2905ced6c;origin=https://github.com/BackofenLab/Cherri</a></span></li> </ul> <div> <div> <div> <p>The pipeline contains Machine Learning segments which were annotated using DOME:</p> </div> </div> </div> <ul> <li><span><a href="https://dome.ds-wizard.org/projects/74d0e01c-6374-41e9-93b8-2889d6a8fe25">https://dome.ds-wizard.org/projects/74d0e01c-6374-41e9-93b8-2889d6a8fe25</a></span></li> </ul>