Videos for PolNet GUI
<p>Contains videos to show usage examples of the different scripts of the PolNet GUI. Specifically, for constructing all the input models necesary generating a single synthetic tomogram (400x400x100 voxels with 10 Angstron voxel size) with two different cytosolic macromolecules, a membrane bound one, microtubules and membranes with ellipsoidal shape.</p> <ol> <li><strong>create_membrane_models</strong>: generates the configuration file of structural model for membranes.</li> <li><strong>create_membrane_models</strong>: generates the configuration file of structural model for filaments.</li> <li><strong>atomic_to_density</strong>: converts PDB atomic models into density map models for macromolecules.</li> <li><strong>align_membrane_proteins</strong>: aligns a density map of a protein with respect to a reference membrane, required for membrane bound proteins.</li> <li><strong>create_macromolecule_models</strong>: generates the configuration file of structural model for macromolecules, inclusing membrane bound ones.</li> <li><strong>gen_dataset_and_results</strong>: shows a example of selecting the input files and parameters to generate a single synthetic tomogram, it also contain examples of how to visualize the output files.</li> </ol>
ShareScore
28/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 0
- Engagement
- 4