IMC Matched Primary and Metastatic Breast Cancer

<p>This repository contains all raw MCD files and the fully annotated dataset file (backup_output.rds) that pertain to imaging mass cytometry analysis of primary and metastatic breast cancers in the manuscript by Grasset et al. "Mapping the breast tumor microenvironment: proximity analysis reveals spatial relationships between macrophage subtypes and metastasis-initiating cancer cells".</p> <p>Otherlegends.zip contains the antibody panel, maps of ROI assignments for each of the 5 TMAs used, and legends/metadata related to all of the individual ROIs.</p> <p>R scripts used for the analysis of this dataset are available on <a href="https://github.com/wjhlab/BreastMetIMC/">https://github.com/wjhlab/BreastMetIMC/</a></p>