Fig. 2 in Phylogenomics reveals within species diversification but incongruence with color phenotypes in widespread orchid bees (Hymenoptera: Apidae: Euglossini)

Fig. 2. Phylogenetic relationships of the E. meriana and E. bombiformis species complexes based on (A) mitochondrial data (mtDNA; CO1 and Cytb) and (B) ultraconserved elements (UCE; 2022 loci). The mtDNA phylogeny was estimated using Bayesian inference in BEAST2, posterior probabilities on nodes were all above 0.9 except for nodes with asterisks (*). The UCE phylogeny was estimated with maximum likelihood using IQ-TREE and a concatenated 100% completeness matrix. Support values on nodes indicate ultrafast bootstrap (UFB) and SH-like (SH) approximate likelihood ratio test scores (SH-aLRT). All support values were above 95/95 except for nodes indicated with asterisks (* or **). One of the E. cingulata individuals (TA12) was pruned to improve the cophylogenetic visualization.The colors of the clades correspond to geographic regions outlined in Fig. 1. Green: Central America, Orange: Choco region, Blue: Amazon Forest, and Pink: Atlantic Forest.