human-oral-v1-0-1 reference for LocalHGT
<p>Please download the file <strong>human-oral-v1-0-1.fasta.gz</strong> and unzip it by "<strong>gzip -d human-oral-v1-0-1.fasta.gz</strong>". After that, pass the full path of the file "<strong>human-oral-v1-0-1.fasta</strong>" to LocalHGT by "<strong>localhgt bkp -r /path-to/human-oral-v1-0-1.fasta</strong>" or "<strong>localhgt event -r /path-to/human-oral-v1-0-1.fasta</strong>". "<strong>human-oral-v1-0-1.fasta</strong><strong>.fai</strong>" is the index file, you can download it or not. If you download it, you should put it in the same folder as <strong>human-oral-v1-0-1.fasta</strong>. If you don't download it, LocalHGT will generate it automatically.<strong> </strong>The file <strong>genomes-all_metadata.tsv</strong> records the taxonomy information of each genome.<strong> </strong>If you want to analyze HGTs in human oral microbiome, you can use this reference.<strong> </strong>Detailed instructions can be seen at <a href="https://github.com/deepomicslab/LocalHGT">LocalHGT</a>.</p>
ShareScore
36/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 20
- Reuse readiness
- 8
- Engagement
- 0
ScienceDex for faculty
Your academic CV and NIH biosketch
Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.