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human-oral-v1-0-1 reference for LocalHGT

<p>Please download the file&nbsp;<strong>human-oral-v1-0-1.fasta.gz</strong>&nbsp;and unzip it by "<strong>gzip -d human-oral-v1-0-1.fasta.gz</strong>". &nbsp;After that, pass the full path of the file "<strong>human-oral-v1-0-1.fasta</strong>" to LocalHGT by "<strong>localhgt bkp -r /path-to/human-oral-v1-0-1.fasta</strong>" or &nbsp;"<strong>localhgt event -r /path-to/human-oral-v1-0-1.fasta</strong>". "<strong>human-oral-v1-0-1.fasta</strong><strong>.fai</strong>" is the index file, you can download it or not. If you download it, you should put it in the same folder as <strong>human-oral-v1-0-1.fasta</strong>. If you don't download it, LocalHGT will generate it automatically.<strong> </strong>The file <strong>genomes-all_metadata.tsv</strong> records the taxonomy information of each genome.<strong>&nbsp;</strong>If you want to analyze HGTs in human oral microbiome, you can use this reference.<strong>&nbsp;</strong>Detailed instructions can be seen at&nbsp;<a href="https://github.com/deepomicslab/LocalHGT">LocalHGT</a>.</p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
20
Reuse readiness
8
Engagement
0

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