Validation of de novo designed water-soluble and transmembrane proteins by in silico folding and melting

<p>Here are all of the datasets generated and analysed during this study.&nbsp;</p> <p>Here is a breakdown of their content:</p> <ul> <li><strong>8_stranded_transmembrane_barrels.zip</strong> - raw data from Alphafold (3 and 48 recycles), ESMFold and raptor predictions of the 8 stranded TMBs. A file with all the sequences is also given</li> <li><strong>12_stranded_transmembrane_barrels.zip -&nbsp;</strong>raw data from the Alphafold and ESMfold predictions of the 12 stranded TMBs. A file with all the sequences is also given</li> <li><strong>water_soluble_barrels.zip</strong> - raw data from the Alphafold and ESMfold predictions of the water soluble beta barrels (designable and non-designable). A file with all the sequences is also given</li> <li><strong>all design models.zip</strong> - original design models for water-soluble (designable and non-designable), 8-stranded and 12-stranded TMBs</li> </ul> <p>&nbsp;</p> <ul> <li><strong>ESMfold_masking_exp.tar -&nbsp;</strong>this tar file contains all the ESMfold masking experiments performed to the water-soluble, 8 and 12-stranded transmembrane barrels. Inside there are zipped datasets for each masking experiment<br>&nbsp;</li> <li> <p><strong>ziped_raw_csv_files.zip - </strong>raw csv files with all the data necessary to&nbsp;analyse&nbsp;the figures&nbsp;</p> </li> <li> <p><strong>analysis_notebooks.zip </strong>- Jupyter&nbsp;notebooks used to analyse the output prediction data&nbsp;for all figures</p> </li> </ul> <p>&nbsp;</p> <p>&nbsp;</p>