UHGG v2 reference for LocalHGT

<p>Genome reference for HGT analysis in <strong>human gut microbiome</strong>, specifically for <strong><a href="https://github.com/deepomicslab/LocalHGT">LocalHGT</a> </strong>with <a href="https://www.nature.com/articles/s41587-020-0603-3">UHGG </a>v2.0.2.</p> <p>&nbsp;</p> <p><em>Usage:</em></p> <p>1. Please download the file&nbsp;<span>UHGG_v2.0.2_representative.fasta.gz</span> and unzip it by&nbsp;<br><code>gzip -d UHGG_v2.0.2_representative.fasta.gz</code></p> <p>After that, pass the full path of the file "UHGG_v2.0.2_representative.fasta" to LocalHGT by&nbsp;<br><code>localhgt bkp -r /path-to/UHGG_v2.0.2_representative.fasta<br></code>or&nbsp; <br><code>localhgt event -r /path-to/UHGG_v2.0.2_representative.fasta</code></p> <p>2. <span>UHGG_v2.0.2_representative.fasta.fai</span> is the index file, you can download it or not.&nbsp;<br>If you download it, you should put it in the same folder as UHGG_v2.0.2_representative.fasta.<br>If you don't download it, LocalHGT will generate it automatically.</p> <p>&nbsp;</p> <p>Detailed instructions can be seen at&nbsp;<a href="https://github.com/deepomicslab/LocalHGT">LocalHGT</a>.</p> <p>&nbsp;</p>