Microscopy images and datasets of Sphingomonas and Methylobacterium on Arabidopsis leaves

<p>This repository contains the supplemental material and raw data to analyse the population density at the CFU-level and single cell-resolution, and spatial distribution of bacterial communities composed of&nbsp;<em>Methylobacterium</em> and/or <em>Sphingomonas</em> species on <em>Arabidopsis thaliana</em>.</p> <p>Identities of each community can be found in metadata.csv and comm_id.csv. Data analysis can be found in the GitHub repository associated to the manuscript: <a href="https://github.com/relab-fuberlin/schlechter_phyllosphere_spatial_distribution" target="_blank" rel="noopener">https://github.com/relab-fuberlin/schlechter_phyllosphere_spatial_distribution</a>.</p> <p>File bacimg.tar.gz contains the pre-processed images of near-isogenic controls, two- and three-species communities (C, S2 and S3).</p> <p>Abbreviations:</p> <p>Fluorescence channels:</p> <ul> <li>C0: Channel 0 (Red fluorescence)</li> <li>C1: Channel 1 (Yellow/Cyan fluorescence)</li> <li>C2: Channel 2 (Cyan fluorescence)</li> </ul> <p>Independent experiments:</p> <ul> <li>e1: Experiment #1</li> <li>e2: Experiment #2</li> </ul> <p>Days post-inoculation:</p> <ul> <li>7d: 7 days-post-inoculation</li> <li>14d: 14 days-post-inoculation</li> </ul> <p>SynCom ID (SynID):</p> <ul> <li>c: near-isogenic controls (C)</li> <li>syn2: two-species communities (S2)</li> <li>syn3: three-species communities (S3)</li> </ul> <p>Community ID (ComID):</p> <ul> <li>com01-com15: Strain composition of each community (see comm_id.csv)</li> </ul>