Three reference genomes for freshwater diatom ecology and evolution

<p>This repository contains the genome assemblies and gene models provided for "Three reference genomes for freshwater diatom ecology and evolution"</p> <p>Authors:</p> <p>Wade R. Roberts (email: wader [at] uark [dot] edu)</p> <p>Andrew J. Alverson (email: aja [at] uark [dot] edu)</p> <p>&nbsp;</p> <p>The Whole Genome Shotgun (WGS) projects are available from NCBI GenBank under accession JALLPB020000000 (C. tholiformis), JALLBG020000000 (D. pseudostelligera), and JALLAZ020000000 (P. triporus).<strong></strong></p> <p><br>The following files are included:</p> <p>Cyclostephanos tholiformis strain AJA228-03</p> <p>&nbsp; &nbsp; aja228-03.consensus.fasta</p> <p>&nbsp; &nbsp; aja228-03.consensus.gff3<br>&nbsp; &nbsp;&nbsp;<br>&nbsp; &nbsp; aja228-03.consensus.proteins.fasta</p> <p>&nbsp; &nbsp; aja228-03.consensus.combined_uniprot_annotation.csv</p> <p>&nbsp; &nbsp; aja228-03.consensus.panther_annotation.csv</p> <p>&nbsp; &nbsp; aja228-03.consensus.pfam_annotation.csv</p> <p>&nbsp;</p> <p>Discostella pseudostelligera strain AJA232-27</p> <p>&nbsp; &nbsp; aja232-27.consensus.fasta</p> <p>&nbsp; &nbsp; aja232-27.consensus.gff3<br>&nbsp; &nbsp;&nbsp;<br>&nbsp; &nbsp; aja232-27.consensus.proteins.fasta</p> <p>&nbsp; &nbsp; aja232-27.consensus.combined_uniprot_annotation.csv</p> <p>&nbsp; &nbsp; aja232-27.consensus.panther_annotation.csv</p> <p>&nbsp; &nbsp; aja232-27.consensus.pfam_annotation.csv</p> <p>&nbsp;</p> <p>Praestephanos triporus strain AJA276-08</p> <p>&nbsp; &nbsp; aja276-08.consensus.fasta</p> <p>&nbsp; &nbsp; aja276-08.consensus.gff3<br>&nbsp; &nbsp;&nbsp;<br>&nbsp; &nbsp; aja276-08.consensus.proteins.fasta</p> <p>&nbsp; &nbsp; aja276-08.consensus.combined_uniprot_annotation.csv</p> <p>&nbsp; &nbsp; aja276-08.consensus.panther_annotation.csv</p> <p>&nbsp; &nbsp; aja276-08.consensus.pfam_annotation.csv</p> <p>&nbsp;</p> <p>R code and phylogenetic tree to reproduce Figure 1 in the manuscript</p> <p>&nbsp; &nbsp; plot-figure-1.R</p> <p>&nbsp; &nbsp; busc.prot.concat.partition.rooted.tree</p> <p>&nbsp;</p>