Serial Coronal Sections Of An Adult Mouse Brain - Sample Dataset

<p>Experimental data: serial coronal sections of the brain of an adult mouse.</p> <p>20 um brain sections sampled every 80 um, imaged on an Olympus VS120 slide scanners with a 10x objective</p> <p>Contains label and overview images and 3 fluorescent channels:</p> <ul> <li>DAPI channel, cell nuclei</li> <li>FITC channel, autofluorescence</li> <li>Cy3 channel, fluorescent sparse mCherry labelled cells</li> </ul> <p>This dataset can be used as a test dataset for the <a href="https://biop.github.io/ijp-imagetoatlas/">Aligning Big Brain and Atlases</a> tool.</p> <p>Animal handling according to protocols approved by the Swiss animal license VD2808.2</p> <p>Two zipped QuPath project that are using the OMERO extension are also provided. One contains the full 97 section dataset, one contains a subset of 25 sections. These data are present in the German BioImaging public OMERO instance (<a href="https://omero-tim.gerbi-gmb.de">https://omero-tim.gerbi-gmb.de</a>).</p> <p>&nbsp;</p> <p>&nbsp;</p>