Data from: Genomic, phenotypic, and environmental correlates of speciation in the midwife toads (Alytes)

<p>This package includes the following :&nbsp;</p> <ul> <li>A matrix of 5,111 SNPs genotyped in the subgenus <em>Alytes&nbsp;</em>(Ao_complex_5111loci.str)</li> <li>A matrix of 3,535 SNPs genotyped in<em> A. o. lusitanicus</em>,<em> A. o. pertinax</em> and<em> A. cisternasii </em>(OC_3535loci.str)</li> <li>A matrix of 15,211 SNPs genotyped in <em>A. o. pertinax</em> and <em>A. dickhilleni</em> (OD_15211loci.str)</li> <li>SNP matrices (.str), Q estimates and environemental suitability estimates (Q_transect_xxx.txt), distances along transects (dist_transect_xxx.txt), hzar inputs (Input_HZ_xxx.csv), lists of diagnostic loci (HZ_xxx_diag_loci.csv) and R commands (HZ_xxx.r), as used to analyze the hybrid zones coded as CAN, HUE, POR, MAD, GAL, PYR</li> <li>Locus-by-locus cline parameters for the eight hybrid zones considered (Clines_HZ_xxx.csv) and R commands used for vizualization (Clines.Display.r)</li> <li>Occurrence records of <em>Alytes</em> (Occurence_dataset.csv)</li> <li>Bioacoustic dataset (Bioacoustic_dataset.csv), and the R commands used for analyses (Bioacoustics.r)</li> <li>Morphometric dataset, including raw measurements (Morphometric_dataset.csv), the input file for GroupStruct (Morphometric_dataset_naked.csv), the size-corrected measurements (Morphometric_dataset_corrected.csv), and the R commands used for analyses (Morphometrics.r)</li> <li>Environemental dataset (Environemental_dataset.csv), and the R commands used for analyses (Environmental.r)</li> </ul>