Samples for CNIC-Proteomics Nextflow pipelines: nf-PTM-compass

<p>We present several input sample files for the execution of various Nextflow pipelines developed by the <em>Cardiovascular Proteomics Lab/Proteomics Unit at the National Centre for Cardiovascular Research</em> (CNIC,&nbsp;<a href="https://www.cnic.es/" target="_blank" rel="noopener">https://www.cnic.es</a>).</p> <p>The <strong>nf-PTM-compass</strong> enhances the identification and quantification of Post-Translational Modifications (PTMs) (<a href="https://github.com/CNIC-Proteomics/nf-PTM-compass" target="_blank" rel="noopener">https://github.com/CNIC-Proteomics/nf-PTM-compass</a>).</p> <p>The available sample files are as follows:</p> <ul> <li><strong>heteroplasmic_heart.zip</strong>: Heart tissue. Input files for nf-PTM-compass, derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_liver.zip</strong>: Liver tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_muscle.zip</strong>: Mucle tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> </ul> <p>&nbsp;</p> <p>(*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. <em>Cell Reports</em>. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080</p> <p>&nbsp;</p>