TCGA ABSOLUTE auto-calling results with DoAbsolute

<p>The results are calculated with DoAbsolute (https://github.com/ShixiangWang/DoAbsolute) with cancer type specific and pan-cancer mode based on TCGA copy number segments data and mutation data. Take your own risk as the data are auto-processed and no manual check.</p> <p>&nbsp;</p> <p>array&nbsp;&nbsp; &nbsp;sample&nbsp;&nbsp; &nbsp;call status&nbsp;&nbsp; &nbsp;purity&nbsp;&nbsp; &nbsp;ploidy&nbsp;&nbsp; &nbsp;Genome doublings&nbsp;&nbsp; &nbsp;delta&nbsp;&nbsp; &nbsp;Coverage for 80% power&nbsp;&nbsp; &nbsp;Cancer DNA fraction&nbsp;&nbsp; &nbsp;Subclonal genome fraction&nbsp;&nbsp; &nbsp;tau&nbsp;&nbsp; &nbsp;E_CR<br> TCGA-OR-A5JO-01&nbsp;&nbsp; &nbsp;TCGA-OR-A5JO-01&nbsp;&nbsp; &nbsp;called&nbsp;&nbsp; &nbsp;1&nbsp;&nbsp; &nbsp;5&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;0.2&nbsp;&nbsp; &nbsp;21&nbsp;&nbsp; &nbsp;1&nbsp;&nbsp; &nbsp;0.01&nbsp;&nbsp; &nbsp;5.00281122783359&nbsp;&nbsp; &nbsp;0<br> TCGA-OR-A5KQ-10&nbsp;&nbsp; &nbsp;TCGA-OR-A5KQ-10&nbsp;&nbsp; &nbsp;called&nbsp;&nbsp; &nbsp;0.69&nbsp;&nbsp; &nbsp;5&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;0.17&nbsp;&nbsp; &nbsp;29&nbsp;&nbsp; &nbsp;0.85&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;4.99022535717521&nbsp;&nbsp; &nbsp;0<br> TCGA-OR-A5L8-10&nbsp;&nbsp; &nbsp;TCGA-OR-A5L8-10&nbsp;&nbsp; &nbsp;called&nbsp;&nbsp; &nbsp;0.56&nbsp;&nbsp; &nbsp;3.99&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;0.18&nbsp;&nbsp; &nbsp;27&nbsp;&nbsp; &nbsp;0.72&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;4.02086049427876&nbsp;&nbsp; &nbsp;0<br> TCGA-OU-A5PI-10&nbsp;&nbsp; &nbsp;TCGA-OU-A5PI-10&nbsp;&nbsp; &nbsp;called&nbsp;&nbsp; &nbsp;0.75&nbsp;&nbsp; &nbsp;5&nbsp;&nbsp; &nbsp;0&nbsp;&nbsp; &nbsp;0.18&nbsp;&nbsp; &nbsp;28&nbsp;&nbsp; &nbsp;0.88&nbsp;&nbsp; &nbsp;0.01&nbsp;&nbsp; &nbsp;5.01366221195135&nbsp;&nbsp; &nbsp;0</p> <p>&nbsp;</p> <p>Please cite the following paper if you use it in academic research:</p> <ul> <li>Wang, Shixiang, et al. &quot;The predictive power of tumor mutational burden&nbsp;in lung cancer immunotherapy response is influenced by patients&#39; sex.&quot;&nbsp;International journal of cancer (2019).</li> <li>Carter, Scott L., et al. &ldquo;Absolute quantification of somatic DNA alterations in human cancer.&rdquo; Nature biotechnology 30.5 (2012): 413.</li> </ul> <p>&nbsp;</p>