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Root tissue segmentation dataset

<p>The PHDFM dataset is composed of fluorescence microscopy images of root tissue samples from <em>A. thaliana</em>, using the ratiometric fluorescent indicator 8‐hydroxypyrene‐1,3,6‐trisulfonic acid trisodium salt (HPTS). This semantic segmentation training dataset consists of 2D microscopy images (the brightfield channel for excitation at 405 nm), each containing a segmentation mask as an additional image channel (manually annotated by plant biologists). The segmentation masks classify pixels into the following 5 labels with the corresponding IDs: background (0), root tissue (1), early elongation zone (2), late elongation zone (3), and meristematic zone (4).</p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
16
Reuse readiness
8
Engagement
4

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