A hifi testing dataset derived from SRR13128014 (zymo D6331)
<p>This is a small dataset subsampled from SRR13128014 which represents a mock community, zymoBIOMICS D6331.</p> <p> </p> <p>We extraced E.coli reads by alignment, then used `seqtk subseq read.fq.gz 0.1` to randomly pick 10% from them. This is created for testing if hifiasm-meta (https://github.com/xfengnefx/hifiasm-meta ) runs. For r57, it roughly needs 170s on 48 threads with peak memory of 18GB. Refer to the tar.gz file for expected results. Hicanu and metaflye should be able to successfully run on this dataset as well.</p>
ShareScore
36/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
Topics
Dataset details
- Repository
- zenodo
- Published
- January 25, 2022
- License
- cc-by-4.0
- DOI
- 10.5281/zenodo.5908203
Scored with release 0.9.0
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