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Test datasets for segmentation (2D, 3D, timelapses)

<p>Datasets for testing: 1) Arabidopsis in 3D with membrane labelling for testing Unet, Stardist and denoising models.</p> <p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;2) Ascadian embryo in 3D imaged via light sheet for testing Unet and Stardist models.&nbsp;</p> <p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;3) Carcinoma cells 3D + time data imaged under low SNR conditions for testing Unet, Stardist and Denoising models.</p> <p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;4) Tissue in 2D + time for testing Unet models.&nbsp;Data imaged by Mari Tolonen at the University of Copenhagen.</p> <p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;5) Nuclei in 3D. Raw, GT and model prediction. Data imaged by Mari Tolonen at the University of Copenhagen.&nbsp;</p> <p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;6) Nuclei cell mask 2D.&nbsp;Raw, GT and model prediction. Data imaged by Mari Tolonen at the University of Copenhagen &nbsp;&nbsp;</p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
20
Reuse readiness
8
Engagement
0