ANANSE: REMAP genome coverage

<p><strong>hg38:&nbsp;</strong>Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg38). All peaks in bed format (<a href="https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz">https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz</a>) were computed to bigwig format using:</p> <pre><code>zcat remap2022_all_macs2_hg38_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg38.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg38.fa.sizes -i - &gt; tmp.bg &amp;&amp; bedGraphToBigWig tmp.bg / hg38.fa.sizes remap2022.hg38.w50.bw &amp;&amp; rm tmp.bg</code></pre> <p>&nbsp;</p> <p><strong>hg19:&nbsp;</strong>Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg19). All peaks in bed format (<a href="https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz">https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz</a>) were computed to bigwig format using:</p> <pre><code>zcat remap2022_all_macs2_hg19_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg19.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg19.fa.sizes -i - &gt; tmp.bg &amp;&amp; bedGraphToBigWig tmp.bg / hg19.fa.sizes remap2022.hg19.w50.bw &amp;&amp; rm tmp.bg</code></pre> <p>&nbsp;</p>