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datasets available to search
ShareScore release 0.9.0
Dataset results
3 results for “ANANSE”
ANANSE: REMAP genome coverage
<p><strong>hg38: </strong>Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg38). All peaks in bed format (<a href="https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz">https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz</a>) were computed to bigwig format using:</p> <pre><code>zcat remap2022_all_macs2_hg38_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg38.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg38.fa.sizes -i - > tmp.bg && bedGraphToBigWig tmp.bg / hg38.fa.sizes remap2022.hg38.w50.bw && rm tmp.bg</code></pre> <p> </p> <p><strong>hg19: </strong>Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg19). All peaks in bed format (<a href="https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz">https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz</a>) were computed to bigwig format using:</p> <pre><code>zcat remap2022_all_macs2_hg19_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg19.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg19.fa.sizes -i - > tmp.bg && bedGraphToBigWig tmp.bg / hg19.fa.sizes remap2022.hg19.w50.bw && rm tmp.bg</code></pre> <p> </p>
LINCS MCF10A GRNs calculated with ANANSE
<p>GRNs calculated using ANANSE presumably active in LINCS MCF10A cell cultures perturbated with various TFs.</p>
Identify key transcription factors in cell fate determination using ANANSE
<p>The example data used in ANANSE protocol.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.