LivingNER terminology: NCBI Taxonomy translated to Spanish

<pre>Official NCBI Taxonomy FTP dump (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/) with the terms translated to Spanish by a Neural Machine Translator fine-tuned for the biomedical domain.</pre> <p>We have added the following terms:&nbsp;</p> <pre><code>2560602    Mumps orthorubulavirus    Mumps orthorubulavirus    scientific name    Paperas ortorubulavirus 2560526    Human orthorubulavirus 4    Human orthorubulavirus 4    scientific name    orthorubulavirus humano 4 2847144    hepatitis C virus genotype 1a    hepatitis C virus genotype 1a    scientific name    virus de la hepatitis C genotipo 1a 2560525    Human orthorubulavirus 2    Human orthorubulavirus 2    scientific name    orthorubulavirus humano 2 _NOCODE_    out of NCBI Taxonomy scope    out of NCBI Taxonomy scope    NA    mención no codificable a NCBI Taxonomy</code></pre> <p>The first 4 were added because they appear in the LivingNER corpus, and are present in the browser version of NCBI&nbsp;Taxonomy.</p> <p>The last one (_NOCODE_) is added to identify terms in LivingNER corpus not present in the&nbsp;NCBI&nbsp;Taxonomy.</p> <p>&nbsp;</p> <p>&nbsp;</p> <p><strong>Format:</strong></p> <p>Tab-separated file with the following columns:</p> <ul> <li>tax_id:&nbsp;the id of node associated with this name</li> <li>name_txt:&nbsp;name itself</li> <li>unique name:&nbsp;the unique variant of this name if name not unique</li> <li>name class:&nbsp;(synonym, common name, scientific name, ...)</li> <li>Spanish name: name in Spanish</li> </ul> <p>&nbsp;</p> <p><strong>Please cite if you use this dataset:</strong></p> <p>A. Miranda-Escalada, E. Farr&eacute;-Maduell, S. Lima-L&oacute;pez, D. Estrada, L. Gasc&oacute;, M. Krallinger, Mention detection, normalization &amp; classification of species, pathogens, humans and food in clinical documents: Overview of livingner shared task and resources,&nbsp;<em>Procesamiento del Lenguaje Natural</em>&nbsp;(2022)</p> <pre><code>@article{amiranda2022nlp, title={Mention detection, normalization \&amp; classification of species, pathogens, humans and food in clinical documents: Overview of LivingNER shared task and resources}, author={Miranda-Escalada, Antonio and Farr{\'e}-Maduell, Eul{`a}lia and Lima-L{\'o}pez, Salvador and Estrada, Darryl and Gasc{\'o}, Luis and Krallinger, Martin}, journal = {Procesamiento del Lenguaje Natural}, year={2022} }</code></pre> <p>&nbsp;</p> <p><strong>Resources</strong></p> <ul> <li><a href="https://temu.bsc.es/livingner/"><strong>Web</strong></a></li> <li><a href="https://doi.org/10.5281/zenodo.6376662"><strong>Training and validation set</strong></a></li> <li><a href="https://doi.org/10.5281/zenodo.6385162"><strong>Annotation Guidelines</strong></a></li> <li><a href="https://github.com/tonifuc3m/livingner-evaluation-library"><strong>Evaluation library</strong></a></li> </ul> <p>&nbsp;</p> <p>For more information visit&nbsp;<a href="https://temu.bsc.es/livingner/">https://temu.bsc.es/livingner/</a>&nbsp;or email us at encargo-pln-life@bsc.es</p> <p>Check out the translator demo:&nbsp;https://textmining.bsc.es/translator</p>