Data for Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation

<p>This is the data and code corresponding to <a href="https://doi.org/10.1038/s41467-022-30493-3">Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation</a>, <em>Nature Comms.</em> <strong>13</strong>:3348.</p> <p><strong>Code</strong></p> <p>The file Surface_Evolver_script.txt is ... the Surface Evolver script, use with <a href="http://facstaff.susqu.edu/brakke/evolver/evolver.html">Ken Brakke&#39;s Surface Evolver</a></p> <p><strong>Data sources</strong></p> <p>The figure panels are based on the datafiles listed below, visualised either with <a href="http://facstaff.susqu.edu/brakke/evolver/evolver.html">Ken Brakke&#39;s Surface Evolver </a>or with <a href="http://www.gnuplot.info/">gnuplot 5</a>. When the datafiles listed do not contain the primary data, they contain a commented last line which is the command line for the software&nbsp;<a href="https://doi.org/10.5281/zenodo.5911337">datamerge</a> to generate it from other datafiles found in the Data_sources subdirectory.</p> <p><strong>Figure 1</strong></p> <p>Fig. 1c : data provided in <code>data_for_Fig_1g.tsv</code></p> <p>Fig. 1f : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code></p> <p>Fig. 1g : <code>myosin_profile_us_only.pdf</code> generated with gnuplot script <code>myosin_profile.plot</code></p> <p><strong>Figure 2</strong></p> <p>Fig. 2a : <code>strain_profile_100_0_time_013.pdf</code> generated with gnuplot script <code>strain_profile.plot</code></p> <p>Fig. 2b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code></p> <p>Fig. 2c : <code>stress_profile_100_0_time_013.pdf</code> gnuplot script <code>stress_profile.plot</code></p> <p>Fig. 2d : visualisation from Surface Evolver file <code>Young100dixPoisson000Step063.dmp</code></p> <p><strong>Figure 3</strong></p> <p>Fig. 3a : <code>myosin_area.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p>Fig. 3b : <code>area_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p>Fig. 3c : <code>only_AP_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p>Fig. 3d : <code>only_DV_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p>Fig. 3e : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp</code></p> <p><strong>Figure 4</strong></p> <p>Fig. 4a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step213.dmp</code></p> <p>Fig. 4b : <code>furrow_propagation.pdf</code> generated with gnuplot script <code>furrow_propagation.plot</code></p> <p>Fig. 4c : <code>rate_of_furrowing_t=3.pdf</code> generated with gnuplot script <code>furrow_propagation.plot</code></p> <p>Fig. 4f : <code>curvature.pdf</code> generated with gnuplot script <code>curvature.plot</code></p> <p><strong>Figure 5</strong></p> <p>Fig. 5a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step113.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp</code></p> <p>Fig. 5b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step140.dmp</code></p> <p>Fig. 5d : <code>stress_laserablations_profile_100_0_time_063.pdf</code> generated with gnuplot script <code>stress_profile_for_laser_ablations.plot</code></p> <p>Fig. 5e : <code>laser_ablation_recoil.pdf</code> generated with gnuplot script <code>laser_ablation_recoil.plot</code></p> <p><strong>Supp Figure 1</strong></p> <p>Fig. S1a : <code>time_profile_FINI_100_0.pdf</code> generated with gnuplot script <code>time_profile_stress.plot</code></p> <p>Fig. S1b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code></p> <p>Fig. S1d : visualisation from Surface Evolver file <code>Young100dixPoisson000Step063.dmp</code></p> <p>Fig. S1e : <code>strain_profile_100_0_time_063.pdf</code> gnuplot script <code>strain_profile.plot</code></p> <p>Fig. S1f : <code>stress_profile_100_0_time_063.pdf</code> gnuplot script <code>stress_profile.plot</code></p> <p><strong>Supp Figure 1</strong></p> <p>Fig. S2a : <code>area_stripes_time_evolution.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p>Fig. S2b : <code>area_stripes_time_evolution_SPIM.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code></p> <p><strong>Supp Figure 3</strong></p> <p>Fig. S3a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step213.dmp</code></p> <p>Fig. S3c : <code>AP_binned_strain.pdf</code> generated with gnuplot script <code>AP_binned_strain.plot</code></p> <p>Fig. S3d : <code>furrow_propagation_experimental.pdf</code> generated with gnuplot script <code>plot_furrow.plot</code></p> <p>Fig. S3e : <code>curvature_DV_indiv.pdf</code> generated with gnuplot script <code>curvature.plot</code></p> <p>Fig. S3f : <code>depth_Gastrulation_ordi_Wild_Type_STITCHED_100_0.pdf</code> generated with gnuplot script <code>depth.plot</code></p>